Variant report

Variant	rs16825208
Chromosome Location	chr3:155367470-155367471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10212594	0.81[CEU][hapmap]
rs11707005	0.81[CEU][hapmap]
rs12638480	0.81[CEU][hapmap]
rs13314098	0.81[CEU][hapmap]
rs13317911	0.81[CEU][hapmap]
rs13326969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13327502	0.81[CEU][hapmap]
rs16825229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16825256	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17411990	1.00[CEU][hapmap]
rs2304406	0.81[CEU][hapmap]
rs4425301	0.81[CEU][hapmap]
rs4679751	0.81[CEU][hapmap]
rs4680193	0.81[CEU][hapmap]
rs4680195	0.81[CEU][hapmap]
rs4680202	0.90[CEU][hapmap]
rs4680206	0.81[CEU][hapmap]
rs4680207	0.81[CEU][hapmap]
rs56007034	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62286076	0.86[EUR][1000 genomes]
rs6783986	0.81[CEU][hapmap]
rs6795967	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6802895	0.81[CEU][hapmap]
rs6807243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6807368	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6808145	0.81[CEU][hapmap]
rs7637459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7644232	0.81[CEU][hapmap]
rs932207	0.81[CEU][hapmap]
rs932208	0.81[CEU][hapmap]
rs9829178	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9866635	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155357400-155379000	Weak transcription	Gastric	stomach
2	chr3:155364800-155369600	Weak transcription	A549	lung
3	chr3:155365400-155375000	Weak transcription	Fetal Thymus	thymus
4	chr3:155365400-155375000	Weak transcription	Thymus	Thymus
5	chr3:155366200-155368400	Weak transcription	Fetal Kidney	kidney
6	chr3:155366200-155369200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:155366600-155379000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:155366600-155379000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:155366800-155369600	Weak transcription	HepG2	liver
10	chr3:155367000-155368600	Weak transcription	Stomach Mucosa	stomach
11	chr3:155367400-155369600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:155367400-155376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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