Variant report

Variant	rs4679751
Chromosome Location	chr3:155248723-155248724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10212594	1.00[CEU][hapmap]
rs1072140	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs11707005	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs12107115	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12330573	0.81[ASN][1000 genomes]
rs12633252	0.81[ASN][1000 genomes]
rs12633676	0.85[AMR][1000 genomes]
rs12637360	0.86[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12638480	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13314098	1.00[CEU][hapmap]
rs13317911	1.00[CEU][hapmap]
rs13326969	0.84[CEU][hapmap]
rs13327502	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401693	0.85[ASN][1000 genomes]
rs16825208	0.81[CEU][hapmap]
rs16825229	0.84[CEU][hapmap]
rs17411990	0.85[CEU][hapmap]
rs1850847	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs2090577	0.81[ASN][1000 genomes]
rs2304406	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2320187	0.81[ASN][1000 genomes]
rs4425301	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs4679749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680193	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs4680195	1.00[CEU][hapmap]
rs4680197	1.00[CEU][hapmap]
rs4680202	1.00[CEU][hapmap]
rs4680206	1.00[CEU][hapmap]
rs4680207	1.00[CEU][hapmap]
rs55676183	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6783986	1.00[CEU][hapmap]
rs6802895	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs6804318	0.86[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6805849	0.80[ASN][1000 genomes]
rs6806216	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6807243	0.84[CEU][hapmap]
rs6808145	1.00[CEU][hapmap]
rs7636215	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7637459	0.84[CEU][hapmap]
rs7644232	1.00[CEU][hapmap];0.80[ASN][1000 genomes]
rs884338	0.92[CEU][hapmap]
rs925967	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs925968	0.81[ASN][1000 genomes]
rs932207	1.00[CEU][hapmap]
rs932208	1.00[CEU][hapmap]
rs9814642	1.00[CEU][hapmap]
rs9823723	1.00[CEU][hapmap]
rs9826383	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9840447	0.85[CEU][hapmap]
rs9851365	1.00[CEU][hapmap]
rs9852886	0.83[ASN][1000 genomes]
rs9866635	0.85[CEU][hapmap]
rs9867144	0.85[ASN][1000 genomes]
rs9870721	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:155231200-155253000	Weak transcription	A549	lung
5	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
6	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
8	chr3:155232400-155250400	Weak transcription	Gastric	stomach
9	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
10	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:155238000-155249000	Strong transcription	Dnd41	blood
13	chr3:155241800-155248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:155241800-155248800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:155241800-155249000	Weak transcription	Fetal Thymus	thymus
16	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:155244600-155248800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:155244800-155249800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:155244800-155258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:155245000-155249000	Weak transcription	Thymus	Thymus
21	chr3:155247200-155253000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:155248400-155250400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:155248400-155260000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:155248600-155249200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:155248600-155250600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links