Variant report

Variant	rs6804318
Chromosome Location	chr3:155238907-155238908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155233725..155236856-chr3:155237898..155240104,3	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10212594	0.86[CEU][hapmap]
rs1072140	0.83[CEU][hapmap]
rs10936004	0.85[ASN][1000 genomes]
rs11707005	0.86[CEU][hapmap]
rs11709283	0.89[ASN][1000 genomes]
rs11709568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11714606	0.89[ASN][1000 genomes]
rs11715278	0.83[CHB][hapmap]
rs11928089	0.82[CHB][hapmap]
rs12107115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12630784	0.81[ASN][1000 genomes]
rs12631218	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs12633676	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12637360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12638480	0.85[CEU][hapmap]
rs12696031	0.82[CHB][hapmap]
rs13074373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13080233	0.89[ASN][1000 genomes]
rs13094738	0.95[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs13100169	0.82[CHB][hapmap]
rs13314098	0.86[CEU][hapmap]
rs13317911	0.86[CEU][hapmap]
rs13327502	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs1850847	0.85[CEU][hapmap]
rs2304406	0.86[CEU][hapmap]
rs2351	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs2352	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs28575712	0.88[ASN][1000 genomes]
rs35259851	0.89[ASN][1000 genomes]
rs35630673	0.83[ASN][1000 genomes]
rs4425301	0.86[CEU][hapmap]
rs4679745	0.95[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4679746	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4679747	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs4679749	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4679751	0.86[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4680180	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4680182	0.88[ASN][1000 genomes]
rs4680183	0.83[ASN][1000 genomes]
rs4680185	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4680193	0.86[CEU][hapmap]
rs4680195	0.86[CEU][hapmap]
rs4680197	0.85[CEU][hapmap]
rs4680202	0.86[CEU][hapmap]
rs4680206	0.86[CEU][hapmap]
rs4680207	0.86[CEU][hapmap]
rs6440990	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs6440993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6440994	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6440995	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6783986	0.86[CEU][hapmap]
rs6798100	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6802079	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs6802895	0.86[CEU][hapmap]
rs6806216	0.82[AMR][1000 genomes]
rs6808145	0.86[CEU][hapmap]
rs7615026	0.82[CHB][hapmap]
rs7616618	0.89[ASN][1000 genomes]
rs7616703	0.85[ASN][1000 genomes]
rs7618495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7636215	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7637342	0.88[YRI][hapmap]
rs7643640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7644232	0.86[CEU][hapmap]
rs925967	0.85[CEU][hapmap]
rs9289955	0.81[ASN][1000 genomes]
rs932207	0.86[CEU][hapmap]
rs932208	0.86[CEU][hapmap]
rs9809653	0.88[ASN][1000 genomes]
rs9814642	0.85[CEU][hapmap]
rs9818939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9823723	0.85[CEU][hapmap]
rs9823946	0.82[CHB][hapmap]
rs9826383	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9829532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9848852	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9850280	0.89[ASN][1000 genomes]
rs9851365	0.85[CEU][hapmap]
rs9856512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9869956	0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9870325	0.86[ASN][1000 genomes]
rs9870721	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230400-155241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:155230600-155241000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155230600-155241200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:155230600-155242800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155230600-155243800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:155230800-155241200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:155230800-155244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:155231200-155253000	Weak transcription	A549	lung
13	chr3:155232200-155239200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:155232200-155241000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:155232200-155241200	Weak transcription	Esophagus	oesophagus
16	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
17	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
19	chr3:155232400-155241200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr3:155232400-155244000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155232400-155247000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:155232400-155250400	Weak transcription	Gastric	stomach
23	chr3:155235000-155239400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
25	chr3:155236200-155241200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:155236400-155239400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr3:155236400-155241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr3:155238000-155239800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:155238000-155249000	Strong transcription	Dnd41	blood
32	chr3:155238400-155239200	Enhancers	Fetal Kidney	kidney
33	chr3:155238600-155241200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:155238800-155241000	Weak transcription	Thymus	Thymus
35	chr3:155238800-155241200	Weak transcription	Fetal Thymus	thymus

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