Variant report

Variant	rs6798100
Chromosome Location	chr3:155196730-155196731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10936004	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11709283	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11709568	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11714606	0.91[ASN][1000 genomes]
rs12107115	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12630784	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12631218	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12633188	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12633236	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12634171	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12637360	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13074373	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13080233	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13093286	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13094738	0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs181696	0.87[YRI][hapmap]
rs2351	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2352	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28575712	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35259851	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35630673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36006137	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4679745	0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs4679746	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679747	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680180	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4680181	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680182	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680183	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56103965	0.85[ASN][1000 genomes]
rs6440990	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6440993	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6440994	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6440995	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6770715	0.81[AMR][1000 genomes]
rs6802079	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs6804318	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7616618	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7616703	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7618495	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7643640	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9289955	0.85[ASN][1000 genomes]
rs9809653	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9818939	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9829532	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9848852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850280	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9856512	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9869956	0.82[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9870325	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155178400-155198800	Weak transcription	Thymus	Thymus
2	chr3:155180800-155200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:155187200-155216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:155193000-155196800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155195200-155199600	Weak transcription	Fetal Thymus	thymus
7	chr3:155195200-155203400	Strong transcription	Dnd41	blood
8	chr3:155196000-155198800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155196000-155202600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:155196200-155231600	Weak transcription	Gastric	stomach
11	chr3:155196400-155198800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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