Variant report

Variant	rs181696
Chromosome Location	chr3:155266104-155266105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10936006	0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs10936014	0.80[JPT][hapmap]
rs12632699	0.95[JPT][hapmap]
rs1401695	0.95[JPT][hapmap]
rs1607589	0.81[ASN][1000 genomes]
rs1607590	0.95[JPT][hapmap]
rs1607591	0.95[JPT][hapmap]
rs173369	0.85[JPT][hapmap]
rs183088	0.85[JPT][hapmap]
rs1878859	0.94[JPT][hapmap]
rs1879089	0.95[JPT][hapmap];0.88[YRI][hapmap]
rs189639	0.80[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.83[ASN][1000 genomes]
rs1914799	0.95[JPT][hapmap]
rs1967426	0.81[YRI][hapmap]
rs2007826	0.85[ASN][1000 genomes]
rs2015945	0.86[JPT][hapmap]
rs2102897	0.81[JPT][hapmap]
rs2203885	0.91[JPT][hapmap];0.81[YRI][hapmap]
rs2315589	0.90[JPT][hapmap]
rs358908	0.86[JPT][hapmap]
rs358909	0.86[JPT][hapmap]
rs359538	0.87[ASN][1000 genomes]
rs359539	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs359540	0.95[JPT][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs359542	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs359547	0.85[ASN][1000 genomes]
rs359548	0.85[ASN][1000 genomes]
rs359549	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs359550	0.90[ASN][1000 genomes]
rs359551	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs359552	0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs359553	0.80[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs359554	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs359555	0.84[ASN][1000 genomes]
rs359556	0.95[JPT][hapmap]
rs359557	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.82[ASN][1000 genomes]
rs359561	0.95[JPT][hapmap]
rs359565	0.85[JPT][hapmap]
rs359566	0.95[JPT][hapmap]
rs359568	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs359569	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs359570	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs359572	0.83[ASN][1000 genomes]
rs359573	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs3908138	0.95[JPT][hapmap]
rs3908140	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap]
rs3908141	0.95[JPT][hapmap]
rs3908144	0.95[JPT][hapmap]
rs3914780	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4125975	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4287944	0.89[JPT][hapmap]
rs4401403	0.95[JPT][hapmap]
rs4680185	0.85[YRI][hapmap]
rs4680201	0.95[JPT][hapmap]
rs4680205	0.95[JPT][hapmap]
rs4680210	0.81[JPT][hapmap]
rs484663	0.95[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs486714	0.84[ASN][1000 genomes]
rs497397	0.85[ASN][1000 genomes]
rs500051	0.90[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs517971	0.95[JPT][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes]
rs521073	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs531139	0.83[ASN][1000 genomes]
rs536008	0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs537730	0.88[ASN][1000 genomes]
rs538440	0.83[ASN][1000 genomes]
rs569813	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs578492	0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs59567840	0.82[ASN][1000 genomes]
rs628026	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440996	0.82[ASN][1000 genomes]
rs6440997	0.85[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6440998	0.95[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441002	0.95[JPT][hapmap]
rs6441003	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs6441005	0.91[JPT][hapmap];0.81[YRI][hapmap]
rs658283	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs673001	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6767886	0.95[JPT][hapmap]
rs6768777	0.95[JPT][hapmap]
rs6769807	0.81[JPT][hapmap]
rs6770715	0.84[CEU][hapmap]
rs6779500	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6793225	0.95[JPT][hapmap]
rs6798100	0.87[YRI][hapmap]
rs7609669	0.95[JPT][hapmap]
rs7629025	0.95[JPT][hapmap]
rs7629557	0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7641141	0.95[JPT][hapmap]
rs783550	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9809924	0.95[JPT][hapmap]
rs9818926	0.90[JPT][hapmap]
rs9828161	0.95[JPT][hapmap]
rs9848852	0.85[YRI][hapmap]
rs9865998	0.95[JPT][hapmap]
rs9874559	0.95[JPT][hapmap]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
3	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155253600-155273600	Weak transcription	Gastric	stomach
5	chr3:155253800-155266200	Weak transcription	Fetal Kidney	kidney
6	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:155259400-155284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:155259600-155271400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:155259800-155266600	Weak transcription	Thymus	Thymus
11	chr3:155259800-155278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:155260000-155271600	Weak transcription	Fetal Intestine Small	intestine
13	chr3:155260000-155278200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr3:155263600-155270200	Weak transcription	Fetal Intestine Large	intestine
16	chr3:155264200-155272800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:155264400-155282200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:155264600-155266800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:155265800-155266200	Enhancers	NHDF-Ad	bronchial
20	chr3:155265800-155266400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:155265800-155266400	ZNF genes & repeats	Dnd41	blood
22	chr3:155265800-155273000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:155266000-155266200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:155266000-155266400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:155266000-155266400	Enhancers	A549	lung
26	chr3:155266000-155266400	Enhancers	NH-A	brain
27	chr3:155266000-155266600	Strong transcription	Fetal Thymus	thymus
28	chr3:155266000-155267400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:155266000-155267800	Enhancers	Primary hematopoietic stem cells	blood
30	chr3:155266000-155268000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:155266000-155268000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:155266000-155268000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:155266000-155277800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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