Variant report

Variant	rs10936006
Chromosome Location	chr3:155243424-155243425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155239458..155242156-chr3:155242242..155245000,2	MCF-7	breast:
2	chr3:155230089..155232797-chr3:155242934..155246077,3	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12632699	0.91[JPT][hapmap]
rs1401695	0.90[JPT][hapmap]
rs1607590	0.90[JPT][hapmap]
rs1607591	0.91[JPT][hapmap]
rs173369	0.80[JPT][hapmap]
rs181696	0.85[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs183088	0.80[JPT][hapmap]
rs1878859	0.89[JPT][hapmap]
rs1879089	0.91[JPT][hapmap]
rs189639	0.91[JPT][hapmap]
rs1914799	0.90[JPT][hapmap]
rs2015945	0.81[JPT][hapmap]
rs2203885	0.86[JPT][hapmap]
rs2315589	0.85[JPT][hapmap]
rs358908	0.82[JPT][hapmap]
rs358909	0.82[JPT][hapmap]
rs359539	0.90[JPT][hapmap]
rs359540	0.90[JPT][hapmap]
rs359542	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs359547	0.82[ASN][1000 genomes]
rs359548	0.82[ASN][1000 genomes]
rs359549	0.90[JPT][hapmap]
rs359551	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs359552	0.91[JPT][hapmap]
rs359553	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs359554	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs359556	0.91[JPT][hapmap]
rs359557	0.91[JPT][hapmap]
rs359561	0.91[JPT][hapmap]
rs359565	0.80[JPT][hapmap]
rs359566	0.91[JPT][hapmap]
rs359568	0.90[JPT][hapmap]
rs359569	0.90[JPT][hapmap]
rs359570	0.90[JPT][hapmap]
rs3908138	0.91[JPT][hapmap]
rs3908140	0.91[JPT][hapmap]
rs3908141	0.90[JPT][hapmap]
rs3908144	0.90[JPT][hapmap]
rs3914780	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4125975	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4287944	0.85[JPT][hapmap]
rs4401403	0.91[JPT][hapmap]
rs4680201	0.90[JPT][hapmap]
rs4680205	0.90[JPT][hapmap]
rs484663	0.90[JPT][hapmap]
rs500051	0.85[JPT][hapmap]
rs517971	0.90[JPT][hapmap]
rs521073	0.82[ASN][1000 genomes]
rs536008	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs569813	0.90[JPT][hapmap]
rs578492	0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs628026	0.83[ASN][1000 genomes]
rs6440996	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6440997	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6440998	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs6441002	0.91[JPT][hapmap]
rs6441003	0.91[JPT][hapmap]
rs6441005	0.86[JPT][hapmap]
rs658283	0.83[ASN][1000 genomes]
rs6767886	0.91[JPT][hapmap]
rs6768777	0.90[JPT][hapmap]
rs6779500	0.83[JPT][hapmap]
rs6793225	0.91[JPT][hapmap]
rs7609669	0.90[JPT][hapmap]
rs7629025	0.90[JPT][hapmap]
rs7629557	0.90[JPT][hapmap]
rs7641141	0.91[JPT][hapmap]
rs783550	0.83[ASN][1000 genomes]
rs9809924	0.90[JPT][hapmap]
rs9818926	0.90[JPT][hapmap]
rs9828161	0.91[JPT][hapmap]
rs9840061	0.86[YRI][hapmap]
rs9840234	0.82[YRI][hapmap]
rs9865998	0.91[JPT][hapmap]
rs9874559	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230600-155243800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:155230800-155244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:155231200-155253000	Weak transcription	A549	lung
8	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
9	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
11	chr3:155232400-155244000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:155232400-155247000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:155232400-155250400	Weak transcription	Gastric	stomach
14	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
15	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:155238000-155249000	Strong transcription	Dnd41	blood
18	chr3:155239400-155244000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:155239800-155248200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:155241000-155245000	Strong transcription	Thymus	Thymus
21	chr3:155241200-155243800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:155241800-155248600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:155241800-155248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:155241800-155248800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:155241800-155249000	Weak transcription	Fetal Thymus	thymus
26	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:155242000-155248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:155243200-155244600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:155243400-155243800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:155243400-155243800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:155243400-155243800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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