Variant report

Variant	rs359552
Chromosome Location	chr3:155273018-155273019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10212586	0.82[ASN][1000 genomes]
rs10212592	0.83[ASN][1000 genomes]
rs10212593	0.83[ASN][1000 genomes]
rs10804772	0.84[ASN][1000 genomes]
rs10936006	0.91[JPT][hapmap]
rs10936012	0.84[ASN][1000 genomes]
rs10936014	0.86[JPT][hapmap]
rs11707218	0.84[ASN][1000 genomes]
rs11924789	0.84[ASN][1000 genomes]
rs12485814	0.84[ASN][1000 genomes]
rs12632699	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12638084	0.85[ASN][1000 genomes]
rs13085349	0.84[ASN][1000 genomes]
rs13085986	0.84[ASN][1000 genomes]
rs1401695	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1589237	0.84[ASN][1000 genomes]
rs1607589	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1607590	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1607591	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs173369	0.91[JPT][hapmap]
rs181696	0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs183088	0.91[JPT][hapmap]
rs1878859	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1879089	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs189639	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1914799	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1967426	0.93[YRI][hapmap]
rs2007826	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2015945	0.91[JPT][hapmap]
rs2102897	0.86[JPT][hapmap]
rs2203885	0.89[CEU][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs2315589	0.92[CEU][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes]
rs34936050	0.84[ASN][1000 genomes]
rs358726	0.81[JPT][hapmap]
rs358908	0.91[JPT][hapmap]
rs358909	0.91[JPT][hapmap]
rs359538	0.97[ASN][1000 genomes]
rs359539	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs359540	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs359542	0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs359547	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs359548	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs359549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs359550	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs359551	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs359553	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs359554	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs359555	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs359556	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs359557	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs359561	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs359562	0.87[ASN][1000 genomes]
rs359563	0.82[ASN][1000 genomes]
rs359564	0.87[ASN][1000 genomes]
rs359565	0.91[JPT][hapmap]
rs359566	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs359568	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs359569	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs359570	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs359572	0.92[ASN][1000 genomes]
rs359573	0.81[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3908138	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3908139	0.84[ASN][1000 genomes]
rs3908140	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3908141	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3908142	0.84[ASN][1000 genomes]
rs3908143	0.84[ASN][1000 genomes]
rs3908144	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3914780	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4083042	0.87[ASN][1000 genomes]
rs4125975	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4287944	0.95[JPT][hapmap];0.93[YRI][hapmap]
rs4401403	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4680201	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4680205	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4680208	0.82[ASN][1000 genomes]
rs4680210	0.86[JPT][hapmap]
rs484663	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs486714	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs497397	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs500051	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs517971	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs521073	0.87[ASN][1000 genomes]
rs531139	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs536008	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs537730	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs538440	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs539240	0.88[ASN][1000 genomes]
rs56229209	0.82[ASN][1000 genomes]
rs569813	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs578492	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59567840	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62287281	0.84[ASN][1000 genomes]
rs628026	0.88[ASN][1000 genomes]
rs6440997	0.86[JPT][hapmap]
rs6440998	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6441002	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6441003	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[ASN][1000 genomes]
rs6441005	0.89[CEU][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs658283	0.88[ASN][1000 genomes]
rs673001	0.84[ASN][1000 genomes]
rs6767886	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6768777	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6769807	0.87[JPT][hapmap]
rs6779500	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6787055	0.85[ASN][1000 genomes]
rs6793225	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6800331	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6802475	0.84[ASN][1000 genomes]
rs7426747	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7433135	0.84[ASN][1000 genomes]
rs7609669	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7610604	0.83[ASN][1000 genomes]
rs7620630	0.82[ASN][1000 genomes]
rs7629025	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7629557	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7641141	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs783550	0.88[ASN][1000 genomes]
rs9809924	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9814374	0.82[ASN][1000 genomes]
rs9814666	0.82[ASN][1000 genomes]
rs9818926	0.91[CEU][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs9828161	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9828965	0.86[ASN][1000 genomes]
rs9844708	0.88[ASN][1000 genomes]
rs9844732	0.82[ASN][1000 genomes]
rs9845615	0.85[ASN][1000 genomes]
rs9865998	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9874559	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
2	chr3:155253600-155273600	Weak transcription	Gastric	stomach
3	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:155259400-155284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:155259800-155278000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:155260000-155278200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:155264400-155282200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:155266000-155277800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:155266200-155287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155266800-155274400	Weak transcription	Lung	lung
13	chr3:155267800-155278000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:155267800-155278000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155268000-155279800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:155270400-155274600	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:155270400-155276800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:155270600-155278600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:155271400-155273200	Enhancers	Primary B cells from cord blood	blood
20	chr3:155271400-155273200	Enhancers	Primary T cells from cord blood	blood
21	chr3:155271400-155273800	Enhancers	HMEC	breast
22	chr3:155271600-155273600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:155271600-155273800	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr3:155271600-155273800	Flanking Active TSS	Dnd41	blood
25	chr3:155271800-155274200	Enhancers	HepG2	liver
26	chr3:155271800-155278200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr3:155272000-155273800	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr3:155272200-155274200	Enhancers	Fetal Kidney	kidney
29	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:155272400-155278000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:155272600-155273200	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:155272600-155273200	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr3:155272600-155273400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:155272600-155273600	Flanking Active TSS	Thymus	Thymus
35	chr3:155272600-155273800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr3:155272600-155273800	Flanking Active TSS	A549	lung
37	chr3:155272600-155274200	Enhancers	Stomach Mucosa	stomach
38	chr3:155272600-155275600	Enhancers	Fetal Intestine Large	intestine
39	chr3:155272800-155273200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr3:155272800-155273400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr3:155272800-155273400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr3:155272800-155273400	Flanking Active TSS	Fetal Thymus	thymus
43	chr3:155272800-155273600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr3:155272800-155274200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:155273000-155273200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:155273000-155273200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:155273000-155273200	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr3:155273000-155273400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
49	chr3:155273000-155273400	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr3:155273000-155273400	Enhancers	Duodenum Mucosa	Duodenum

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