Variant report

Variant	rs628026
Chromosome Location	chr3:155253982-155253983
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10936006	0.83[ASN][1000 genomes]
rs181696	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs189639	0.81[ASN][1000 genomes]
rs2007826	0.84[ASN][1000 genomes]
rs359538	0.85[ASN][1000 genomes]
rs359539	0.86[ASN][1000 genomes]
rs359540	0.81[ASN][1000 genomes]
rs359542	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs359547	0.83[ASN][1000 genomes]
rs359548	0.83[ASN][1000 genomes]
rs359549	0.88[ASN][1000 genomes]
rs359550	0.88[ASN][1000 genomes]
rs359551	0.83[ASN][1000 genomes]
rs359552	0.88[ASN][1000 genomes]
rs359553	0.82[ASN][1000 genomes]
rs359554	0.83[ASN][1000 genomes]
rs359555	0.82[ASN][1000 genomes]
rs359557	0.80[ASN][1000 genomes]
rs359568	0.81[ASN][1000 genomes]
rs359569	0.81[ASN][1000 genomes]
rs359570	0.81[ASN][1000 genomes]
rs359572	0.81[ASN][1000 genomes]
rs3914780	0.83[ASN][1000 genomes]
rs4125975	0.83[ASN][1000 genomes]
rs484663	0.83[ASN][1000 genomes]
rs486714	0.82[ASN][1000 genomes]
rs497397	0.84[ASN][1000 genomes]
rs500051	0.83[ASN][1000 genomes]
rs517971	0.84[ASN][1000 genomes]
rs521073	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs531139	0.81[ASN][1000 genomes]
rs536008	0.82[ASN][1000 genomes]
rs537730	0.87[ASN][1000 genomes]
rs538440	0.81[ASN][1000 genomes]
rs569813	0.81[ASN][1000 genomes]
rs578492	0.82[ASN][1000 genomes]
rs59567840	0.81[ASN][1000 genomes]
rs6440996	0.83[ASN][1000 genomes]
rs6440997	0.83[ASN][1000 genomes]
rs6440998	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs658283	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673001	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs783550	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
4	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:155244800-155258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155248400-155260000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155249400-155254000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:155249800-155254000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:155250200-155258800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:155250400-155258600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:155250800-155256800	Weak transcription	Primary T cells from cord blood	blood
12	chr3:155251800-155254200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr3:155252400-155258800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:155252600-155254000	ZNF genes & repeats	Fetal Thymus	thymus
15	chr3:155253400-155259000	Strong transcription	Dnd41	blood
16	chr3:155253600-155273600	Weak transcription	Gastric	stomach
17	chr3:155253800-155254000	Strong transcription	Thymus	Thymus
18	chr3:155253800-155255400	Weak transcription	Stomach Mucosa	stomach
19	chr3:155253800-155266200	Weak transcription	Fetal Kidney	kidney

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