Variant report

Variant	rs658283
Chromosome Location	chr6:12550572-12550573
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12549413..12551737-chr6:12554854..12557168,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10936006	0.83[ASN][1000 genomes]
rs181696	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs189639	0.81[ASN][1000 genomes]
rs2007826	0.84[ASN][1000 genomes]
rs359538	0.85[ASN][1000 genomes]
rs359539	0.86[ASN][1000 genomes]
rs359540	0.81[ASN][1000 genomes]
rs359542	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs359547	0.83[ASN][1000 genomes]
rs359548	0.83[ASN][1000 genomes]
rs359549	0.88[ASN][1000 genomes]
rs359550	0.88[ASN][1000 genomes]
rs359551	0.83[ASN][1000 genomes]
rs359552	0.88[ASN][1000 genomes]
rs359553	0.82[ASN][1000 genomes]
rs359554	0.83[ASN][1000 genomes]
rs359555	0.82[ASN][1000 genomes]
rs359557	0.80[ASN][1000 genomes]
rs359568	0.81[ASN][1000 genomes]
rs359569	0.81[ASN][1000 genomes]
rs359570	0.81[ASN][1000 genomes]
rs359572	0.81[ASN][1000 genomes]
rs3914780	0.83[ASN][1000 genomes]
rs4125975	0.83[ASN][1000 genomes]
rs484663	0.83[ASN][1000 genomes]
rs486714	0.82[ASN][1000 genomes]
rs497397	0.84[ASN][1000 genomes]
rs500051	0.83[ASN][1000 genomes]
rs517971	0.84[ASN][1000 genomes]
rs521073	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs531139	0.81[ASN][1000 genomes]
rs536008	0.82[ASN][1000 genomes]
rs537730	0.87[ASN][1000 genomes]
rs538440	0.81[ASN][1000 genomes]
rs569813	0.81[ASN][1000 genomes]
rs578492	0.82[ASN][1000 genomes]
rs59567840	0.81[ASN][1000 genomes]
rs628026	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440996	0.83[ASN][1000 genomes]
rs6440997	0.83[ASN][1000 genomes]
rs6440998	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs673001	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs783550	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12547000-12555600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:12547200-12555600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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