Variant report

Variant	rs359556
Chromosome Location	chr3:155295139-155295140
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155291080..155293995-chr3:155294990..155298578,3	K562	blood:

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs10212586	0.91[ASN][1000 genomes]
rs10212592	0.90[ASN][1000 genomes]
rs10212593	0.90[ASN][1000 genomes]
rs1072140	0.88[YRI][hapmap]
rs10804772	0.93[ASN][1000 genomes]
rs10936006	0.91[JPT][hapmap]
rs10936012	0.93[ASN][1000 genomes]
rs10936014	0.86[JPT][hapmap]
rs11707005	0.87[YRI][hapmap]
rs11707218	0.93[ASN][1000 genomes]
rs11924789	0.93[ASN][1000 genomes]
rs12485814	0.93[ASN][1000 genomes]
rs12632699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12638084	0.94[ASN][1000 genomes]
rs12638480	0.93[YRI][hapmap]
rs13085349	0.93[ASN][1000 genomes]
rs13085986	0.93[ASN][1000 genomes]
rs13317911	0.80[YRI][hapmap]
rs1401695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1589237	0.93[ASN][1000 genomes]
rs1589238	0.88[ASN][1000 genomes]
rs1607589	0.89[ASN][1000 genomes]
rs1607590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1607591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs173369	0.91[JPT][hapmap]
rs181696	0.95[JPT][hapmap]
rs183088	0.91[JPT][hapmap]
rs1850847	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1878859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1879089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs189639	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1914799	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2007826	0.91[ASN][1000 genomes]
rs2015945	0.91[JPT][hapmap]
rs2102897	0.86[JPT][hapmap]
rs2203885	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2304406	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs2315589	0.85[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs34936050	0.93[ASN][1000 genomes]
rs358726	0.81[JPT][hapmap]
rs358908	0.91[JPT][hapmap]
rs358909	0.91[JPT][hapmap]
rs359538	0.90[ASN][1000 genomes]
rs359539	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs359540	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs359542	0.81[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs359547	0.90[ASN][1000 genomes]
rs359548	0.90[ASN][1000 genomes]
rs359549	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs359550	0.86[ASN][1000 genomes]
rs359551	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs359552	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs359553	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs359554	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs359555	0.93[ASN][1000 genomes]
rs359557	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs359561	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs359562	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs359563	0.91[ASN][1000 genomes]
rs359564	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs359565	0.91[JPT][hapmap]
rs359566	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs359568	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs359569	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs359570	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs359572	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs359573	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs3908138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3908139	0.93[ASN][1000 genomes]
rs3908140	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3908141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3908142	0.93[ASN][1000 genomes]
rs3908143	0.93[ASN][1000 genomes]
rs3908144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3914780	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4083042	0.90[ASN][1000 genomes]
rs4125975	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4287944	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4401403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4425301	0.86[YRI][hapmap]
rs4680193	0.87[YRI][hapmap]
rs4680195	0.80[YRI][hapmap]
rs4680201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4680202	0.87[YRI][hapmap]
rs4680205	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4680208	0.80[ASN][1000 genomes]
rs4680210	0.86[JPT][hapmap]
rs484663	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs486714	0.91[ASN][1000 genomes]
rs497397	0.91[ASN][1000 genomes]
rs500051	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs517971	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs531139	0.90[ASN][1000 genomes]
rs536008	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs537730	0.88[ASN][1000 genomes]
rs538440	0.90[ASN][1000 genomes]
rs539240	0.90[ASN][1000 genomes]
rs56092312	0.88[ASN][1000 genomes]
rs56229209	0.90[ASN][1000 genomes]
rs569813	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs578492	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs59567840	0.93[ASN][1000 genomes]
rs62287281	0.93[ASN][1000 genomes]
rs6440997	0.86[JPT][hapmap]
rs6440998	0.86[JPT][hapmap]
rs6441002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6441003	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6441005	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs6767886	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6768777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6769807	0.87[JPT][hapmap]
rs6779500	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6783986	0.80[YRI][hapmap]
rs6787055	0.94[ASN][1000 genomes]
rs6787342	0.81[ASN][1000 genomes]
rs6793225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6800331	0.87[ASN][1000 genomes]
rs6802475	0.93[ASN][1000 genomes]
rs6802975	0.84[ASN][1000 genomes]
rs6803070	0.80[ASN][1000 genomes]
rs6808145	0.87[YRI][hapmap]
rs7426747	0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs7433135	0.93[ASN][1000 genomes]
rs7609669	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7610604	0.92[ASN][1000 genomes]
rs7620630	0.91[ASN][1000 genomes]
rs7620947	0.86[ASN][1000 genomes]
rs7629025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7629557	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7641141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7644232	0.87[YRI][hapmap]
rs932207	0.87[YRI][hapmap]
rs9809924	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9810223	0.82[ASN][1000 genomes]
rs9814374	0.91[ASN][1000 genomes]
rs9814666	0.91[ASN][1000 genomes]
rs9818926	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9823723	0.86[YRI][hapmap]
rs9828161	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9828965	0.84[ASN][1000 genomes]
rs9840447	0.87[YRI][hapmap]
rs9844708	0.86[ASN][1000 genomes]
rs9844732	0.91[ASN][1000 genomes]
rs9845615	0.94[ASN][1000 genomes]
rs9847398	0.83[ASN][1000 genomes]
rs9865998	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9874559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:155282000-155295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr3:155289600-155315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155290200-155322200	Weak transcription	A549	lung
11	chr3:155291400-155303000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:155291800-155301800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:155294200-155295400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:155294600-155299200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:155295000-155296200	Enhancers	Fetal Brain Male	brain

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