Variant report

Variant	rs2304406
Chromosome Location	chr3:155282570-155282571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10212594	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1072140	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11707005	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12107115	0.85[CEU][hapmap]
rs12330573	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12633252	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12637360	0.86[CEU][hapmap]
rs12638480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13314098	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13314948	0.84[ASN][1000 genomes]
rs13317911	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13321123	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13326969	0.84[CEU][hapmap]
rs13327502	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1401693	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16825208	0.81[CEU][hapmap]
rs16825229	0.84[CEU][hapmap]
rs17411990	0.85[CEU][hapmap]
rs1850847	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2090577	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2320187	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28544034	0.84[ASN][1000 genomes]
rs359553	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs359556	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs4425301	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4679749	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4679751	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680193	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680194	0.84[ASN][1000 genomes]
rs4680195	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4680196	0.84[ASN][1000 genomes]
rs4680197	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4680198	0.84[ASN][1000 genomes]
rs4680202	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680206	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4680207	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55676183	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6783986	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6802895	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6804318	0.86[CEU][hapmap]
rs6805849	0.89[ASN][1000 genomes]
rs6806216	0.93[CEU][hapmap]
rs6807243	0.84[CEU][hapmap]
rs6808145	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73154286	0.87[ASN][1000 genomes]
rs7636215	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7637459	0.84[CEU][hapmap]
rs7644232	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs884338	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs925967	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs925968	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs932207	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs932208	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9814642	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs9823723	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9826383	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9840447	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9851365	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9852886	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9854228	0.90[JPT][hapmap]
rs9866635	0.85[CEU][hapmap]
rs9867144	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9870721	1.00[CEU][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:155259400-155284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:155266200-155287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr3:155274200-155286000	Weak transcription	Pancreas	Pancrea
9	chr3:155274200-155293800	Weak transcription	Stomach Mucosa	stomach
10	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
11	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
12	chr3:155277000-155283200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:155277600-155285200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:155278400-155289800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:155278600-155282800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:155278600-155287400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:155278800-155289600	Weak transcription	A549	lung
19	chr3:155279400-155283400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr3:155282000-155295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:155282200-155283000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr3:155282400-155283000	Strong transcription	HUES48 Cell Line	embryonic stem cell

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