Variant report

Variant	rs13326969
Chromosome Location	chr3:155377071-155377072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10212594	0.84[CEU][hapmap]
rs11707005	0.84[CEU][hapmap]
rs12638480	0.83[CEU][hapmap]
rs13314098	0.84[CEU][hapmap]
rs13317911	0.84[CEU][hapmap]
rs13327502	0.84[CEU][hapmap]
rs16825208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16825229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16825256	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17411990	1.00[CEU][hapmap]
rs1850847	0.83[CEU][hapmap]
rs2304406	0.84[CEU][hapmap]
rs4425301	0.84[CEU][hapmap]
rs4679751	0.84[CEU][hapmap]
rs4680193	0.84[CEU][hapmap]
rs4680195	0.84[CEU][hapmap]
rs4680197	0.83[CEU][hapmap]
rs4680202	0.92[CEU][hapmap]
rs4680206	0.84[CEU][hapmap]
rs4680207	0.84[CEU][hapmap]
rs56007034	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62286076	0.91[EUR][1000 genomes]
rs6783986	0.84[CEU][hapmap]
rs6795967	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6802895	0.84[CEU][hapmap]
rs6807243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6807368	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808145	0.84[CEU][hapmap]
rs7637459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7644232	0.84[CEU][hapmap]
rs925967	0.83[CEU][hapmap]
rs932207	0.84[CEU][hapmap]
rs932208	0.84[CEU][hapmap]
rs9814642	0.83[CEU][hapmap]
rs9823723	0.83[CEU][hapmap]
rs9829178	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9851365	0.83[CEU][hapmap]
rs9866635	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9870721	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155357400-155379000	Weak transcription	Gastric	stomach
2	chr3:155366600-155379000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155366600-155379000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:155375000-155378600	Weak transcription	A549	lung
5	chr3:155375400-155379000	Weak transcription	Thymus	Thymus
6	chr3:155376200-155378600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155376200-155379000	Weak transcription	Fetal Thymus	thymus
8	chr3:155377000-155377200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155377000-155377800	Weak transcription	Stomach Mucosa	stomach
10	chr3:155377000-155378800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:155377000-155378800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:155377000-155378800	Weak transcription	Fetal Intestine Small	intestine

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