Variant report

Variant	rs13314948
Chromosome Location	chr3:155318923-155318924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155316401..155319022-chr3:155323523..155325985,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212594	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1072140	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707005	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12330573	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12633252	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638480	0.84[ASN][1000 genomes]
rs13314098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13317911	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13321123	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401693	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1850847	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2090577	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2304406	0.84[ASN][1000 genomes]
rs2320187	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28544034	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425301	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680193	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680194	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680195	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680196	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680197	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680198	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680202	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680206	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680207	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55676183	0.84[ASN][1000 genomes]
rs6783986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802895	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805849	0.92[ASN][1000 genomes]
rs6808145	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73154286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7644232	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs884338	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925967	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925968	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs932207	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs932208	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9823723	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9840447	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9852886	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9867144	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155290200-155322200	Weak transcription	A549	lung
2	chr3:155303600-155324400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:155304000-155325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155308200-155322800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:155311800-155319800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:155311800-155319800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155311800-155324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:155312000-155322600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:155313400-155322600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:155313400-155326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:155314400-155322800	Weak transcription	Fetal Intestine Small	intestine
12	chr3:155316800-155319400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:155317000-155319400	Weak transcription	Stomach Mucosa	stomach
14	chr3:155318600-155319800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:155318600-155320200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links