Variant report

Variant	rs4680198
Chromosome Location	chr3:155320829-155320830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155316727..155318768-chr3:155320694..155322803,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212594	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1072140	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707005	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12330573	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12633252	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638480	0.84[ASN][1000 genomes]
rs13314098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13314948	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317911	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13321123	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401693	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1850847	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2090577	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2304406	0.84[ASN][1000 genomes]
rs2320187	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28544034	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425301	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680193	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680195	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680202	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680206	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680207	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55676183	0.84[ASN][1000 genomes]
rs6783986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802895	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805849	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6808145	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73154286	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7644232	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs884338	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925967	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925968	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs932207	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs932208	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9823723	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9840447	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9852886	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9867144	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155290200-155322200	Weak transcription	A549	lung
2	chr3:155303600-155324400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:155304000-155325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155308200-155322800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:155311800-155324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:155312000-155322600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:155313400-155322600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:155313400-155326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:155314400-155322800	Weak transcription	Fetal Intestine Small	intestine
10	chr3:155319400-155321600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:155319600-155321600	Enhancers	HepG2	liver
12	chr3:155320000-155321000	Weak transcription	Stomach Mucosa	stomach
13	chr3:155320000-155324600	Enhancers	Dnd41	blood
14	chr3:155320200-155321400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155320200-155323400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:155320400-155322200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:155320400-155324400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:155320600-155321200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:155320800-155321400	Enhancers	Thymus	Thymus

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