Variant report

Variant	rs28544034
Chromosome Location	chr3:155323019-155323020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10212594	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1072140	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11707005	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12330573	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12633252	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12638480	0.84[ASN][1000 genomes]
rs13314098	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13314948	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13317911	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13321123	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1401693	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1850847	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2090577	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2304406	0.84[ASN][1000 genomes]
rs2320187	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4425301	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680193	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680194	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680195	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680196	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680197	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680198	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680202	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4680206	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680207	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55676183	0.84[ASN][1000 genomes]
rs6783986	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802895	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6805849	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6808145	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73154286	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7644232	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs884338	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925967	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925968	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs932207	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs932208	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9823723	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9840447	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9852886	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9867144	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155303600-155324400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:155304000-155325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:155311800-155324400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr3:155313400-155326400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:155320000-155324600	Enhancers	Dnd41	blood
6	chr3:155320200-155323400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155320400-155324400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:155321800-155326000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:155322000-155323200	Weak transcription	Fetal Thymus	thymus
10	chr3:155322000-155326600	Enhancers	HepG2	liver
11	chr3:155322200-155323800	Enhancers	A549	lung
12	chr3:155322200-155325000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:155322600-155323600	Enhancers	Thymus	Thymus
14	chr3:155322600-155323800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:155322600-155324600	Enhancers	Liver	Liver
16	chr3:155322600-155325000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:155322600-155325800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:155322800-155323200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:155322800-155323600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:155322800-155324200	Enhancers	Stomach Mucosa	stomach
21	chr3:155322800-155324800	Enhancers	Fetal Intestine Small	intestine

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