Variant report

Variant	rs9867144
Chromosome Location	chr3:155299658-155299659
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155295394..155297546-chr3:155297564..155300199,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10212594	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1072140	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11707005	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12330573	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12633252	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12638480	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13314098	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13314948	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13317911	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13321123	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13327502	0.88[ASN][1000 genomes]
rs1401693	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1850847	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090577	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2304406	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2320187	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28544034	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4425301	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4679749	0.85[ASN][1000 genomes]
rs4679751	0.85[ASN][1000 genomes]
rs4680193	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4680194	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680195	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680196	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680197	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680198	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680202	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680206	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680207	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55676183	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6783986	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6787497	0.87[EUR][1000 genomes]
rs6802895	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805849	0.95[ASN][1000 genomes]
rs6808145	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73154286	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7636215	0.80[ASN][1000 genomes]
rs7644232	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs884338	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs925967	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs925968	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs932207	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs932208	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9814642	0.87[EUR][1000 genomes]
rs9823723	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9826383	0.85[ASN][1000 genomes]
rs9840447	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852886	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9870721	0.87[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:155289600-155315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155290200-155322200	Weak transcription	A549	lung
10	chr3:155291400-155303000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:155291800-155301800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:155297800-155310600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:155299200-155299800	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:155299400-155299800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr3:155299400-155299800	Active TSS	Primary T cells from cord blood	blood
16	chr3:155299400-155300000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:155299400-155300400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:155299600-155300000	Active TSS	Dnd41	blood
19	chr3:155299600-155300200	Enhancers	Fetal Thymus	thymus
20	chr3:155299600-155301000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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