Variant report

Variant	rs2102897
Chromosome Location	chr3:155381487-155381488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10936014	0.81[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12632699	0.86[JPT][hapmap]
rs1401695	0.85[JPT][hapmap]
rs1607590	0.86[JPT][hapmap]
rs1607591	0.87[JPT][hapmap]
rs173369	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs181696	0.81[JPT][hapmap]
rs183088	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1878859	0.83[JPT][hapmap]
rs1879089	0.86[JPT][hapmap]
rs189639	0.87[JPT][hapmap]
rs1914799	0.86[JPT][hapmap]
rs193313	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2015945	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2203885	0.91[JPT][hapmap]
rs2315589	0.90[JPT][hapmap]
rs2315590	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs358705	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs358726	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs358908	0.82[JPT][hapmap]
rs358909	0.82[JPT][hapmap]
rs359539	0.86[JPT][hapmap]
rs359540	0.86[JPT][hapmap]
rs359542	0.81[JPT][hapmap]
rs359549	0.86[JPT][hapmap]
rs359551	0.86[JPT][hapmap]
rs359552	0.86[JPT][hapmap]
rs359553	0.86[JPT][hapmap]
rs359554	0.87[JPT][hapmap]
rs359556	0.86[JPT][hapmap]
rs359557	0.86[JPT][hapmap]
rs359561	0.86[JPT][hapmap]
rs359565	0.88[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs359566	0.86[JPT][hapmap]
rs359568	0.86[JPT][hapmap]
rs359569	0.86[JPT][hapmap]
rs359570	0.86[JPT][hapmap]
rs3908138	0.86[JPT][hapmap]
rs3908140	0.86[JPT][hapmap]
rs3908141	0.86[JPT][hapmap]
rs3908144	0.90[JPT][hapmap]
rs3914780	0.86[JPT][hapmap]
rs407033	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410115	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4125975	0.86[JPT][hapmap]
rs416494	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4287944	0.90[JPT][hapmap]
rs4401403	0.86[JPT][hapmap]
rs4680201	0.86[JPT][hapmap]
rs4680205	0.86[JPT][hapmap]
rs4680209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680211	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs484663	0.86[JPT][hapmap]
rs500051	0.81[JPT][hapmap]
rs517971	0.86[JPT][hapmap]
rs536008	0.86[JPT][hapmap]
rs569813	0.86[JPT][hapmap]
rs578492	0.86[JPT][hapmap]
rs6440998	0.80[JPT][hapmap]
rs6441002	0.86[JPT][hapmap]
rs6441003	0.87[JPT][hapmap]
rs6441005	0.91[JPT][hapmap]
rs6441009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767886	0.87[JPT][hapmap]
rs6768777	0.86[JPT][hapmap]
rs6769807	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6779500	0.83[JPT][hapmap]
rs6793225	0.86[JPT][hapmap]
rs7609669	0.86[JPT][hapmap]
rs7620748	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7629025	0.86[JPT][hapmap]
rs7629557	0.86[JPT][hapmap]
rs7641141	0.86[JPT][hapmap]
rs9809924	0.85[JPT][hapmap]
rs9818926	0.90[JPT][hapmap]
rs9828161	0.86[JPT][hapmap]
rs9865998	0.86[JPT][hapmap]
rs9874559	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
2	chr3:155379000-155382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:155379400-155382000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:155379400-155382800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:155379400-155382800	Weak transcription	Pancreas	Pancrea
6	chr3:155379400-155383000	Weak transcription	Gastric	stomach
7	chr3:155379800-155383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:155380000-155381600	Weak transcription	Small Intestine	intestine
9	chr3:155380000-155382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:155380000-155382800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:155380000-155383000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr3:155380000-155383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:155380000-155383200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:155380200-155382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:155380200-155382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:155380400-155383400	Enhancers	Brain Germinal Matrix	brain
17	chr3:155381000-155382200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr3:155381000-155382600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr3:155381200-155382200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr3:155381200-155382800	Enhancers	HepG2	liver
21	chr3:155381200-155383400	Enhancers	Fetal Stomach	stomach
22	chr3:155381200-155383400	Flanking Active TSS	A549	lung
23	chr3:155381200-155386200	Enhancers	Fetal Intestine Small	intestine
24	chr3:155381400-155381600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:155381400-155381800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:155381400-155381800	Enhancers	Fetal Lung	lung
27	chr3:155381400-155381800	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr3:155381400-155382200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:155381400-155382200	Enhancers	Brain Anterior Caudate	brain
30	chr3:155381400-155382400	Enhancers	Stomach Mucosa	stomach
31	chr3:155381400-155382600	Enhancers	Duodenum Mucosa	Duodenum
32	chr3:155381400-155382800	Enhancers	Rectal Mucosa Donor 31	rectum

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