Variant report

Variant	rs4680209
Chromosome Location	chr3:155380803-155380804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155379377..155381344-chr3:155382651..155384726,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10936014	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs173369	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs183088	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs193313	0.87[EUR][1000 genomes]
rs2015945	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2102897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2315590	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs358705	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs359565	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs407033	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs410115	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs416494	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680210	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680211	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769807	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7620748	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378600-155381200	Enhancers	A549	lung
2	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
3	chr3:155379000-155382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:155379400-155381400	Weak transcription	Fetal Lung	lung
5	chr3:155379400-155382000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:155379400-155382800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:155379400-155382800	Weak transcription	Pancreas	Pancrea
8	chr3:155379400-155383000	Weak transcription	Gastric	stomach
9	chr3:155379800-155381400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:155379800-155383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:155380000-155381000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:155380000-155381400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:155380000-155381600	Weak transcription	Small Intestine	intestine
14	chr3:155380000-155382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:155380000-155382800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:155380000-155383000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:155380000-155383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:155380000-155383200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:155380200-155381200	Weak transcription	Fetal Intestine Small	intestine
20	chr3:155380200-155381200	Weak transcription	HepG2	liver
21	chr3:155380200-155381400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:155380200-155381400	Weak transcription	Stomach Mucosa	stomach
23	chr3:155380200-155382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:155380200-155382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:155380400-155383400	Enhancers	Brain Germinal Matrix	brain

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