Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1607589	0.81[ASN][1000 genomes]
rs173369	0.81[AMR][1000 genomes]
rs183088	0.81[AMR][1000 genomes]
rs2015945	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2102897	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2315590	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs358705	0.81[AMR][1000 genomes]
rs359565	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs359573	0.81[ASN][1000 genomes]
rs3908140	0.83[ASN][1000 genomes]
rs407033	0.84[AMR][1000 genomes]
rs4083042	0.81[ASN][1000 genomes]
rs416494	0.81[AMR][1000 genomes]
rs4680205	0.83[ASN][1000 genomes]
rs4680209	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4680210	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4680211	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6441009	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6769807	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6779500	0.83[ASN][1000 genomes]
rs7629557	0.81[ASN][1000 genomes]
rs9828965	0.81[ASN][1000 genomes]
rs9844708	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822300	chr3:155338203-155344148	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv822301	chr3:155338203-155344202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155336800-155346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155338400-155347000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155338600-155346400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:155338600-155347000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search: