Variant report

Variant	rs4680185
Chromosome Location	chr3:155213002-155213003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155208560..155210584-chr3:155212807..155214834,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10936004	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11709283	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11709568	0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11714606	0.89[ASN][1000 genomes]
rs12107115	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12493778	0.86[CHD][hapmap]
rs12630784	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12631218	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12633188	0.91[ASN][1000 genomes]
rs12633236	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12633676	0.80[ASN][1000 genomes]
rs12634171	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12637360	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12696031	0.93[CHD][hapmap]
rs13066178	0.88[CHD][hapmap]
rs13074373	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13080233	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13081656	0.88[CHD][hapmap]
rs13083852	0.88[CHD][hapmap]
rs13093286	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13094738	0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs13100169	0.93[CHD][hapmap]
rs181696	0.85[YRI][hapmap]
rs2351	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2352	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28575712	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35259851	0.91[ASN][1000 genomes]
rs35630673	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36006137	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4679745	0.91[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4679746	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4679747	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680173	0.88[CHD][hapmap]
rs4680174	0.84[CHD][hapmap]
rs4680176	0.88[CHD][hapmap]
rs4680180	0.91[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs4680181	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680182	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680183	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56103965	0.83[ASN][1000 genomes]
rs6440985	0.88[CHD][hapmap]
rs6440990	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6440993	0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6440994	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6440995	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770715	0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs6798100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802079	0.91[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs6804318	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6807784	0.88[CHD][hapmap]
rs7615026	0.93[CHD][hapmap]
rs7616618	0.91[ASN][1000 genomes]
rs7616703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618495	0.82[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7643640	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9289955	0.83[ASN][1000 genomes]
rs9809653	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9818939	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9829532	0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9848852	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9850280	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9856512	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9869956	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9870325	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155187200-155216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:155196200-155231600	Weak transcription	Gastric	stomach
4	chr3:155197000-155218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:155197800-155216000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
7	chr3:155198800-155221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
9	chr3:155199000-155229800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:155199600-155214800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:155200600-155230200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:155200800-155214600	Weak transcription	Fetal Intestine Small	intestine
13	chr3:155200800-155218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:155200800-155223600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr3:155201000-155214600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:155202400-155230000	Weak transcription	A549	lung
18	chr3:155202800-155215800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:155203000-155216200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:155203400-155215600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:155205000-155216200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:155205400-155221800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:155206800-155224000	Strong transcription	Dnd41	blood
24	chr3:155208000-155230200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:155208800-155215800	Weak transcription	HSMMtube	muscle
26	chr3:155209800-155214000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:155210400-155220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr3:155210600-155216000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:155210600-155222600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:155210800-155237600	Weak transcription	Fetal Kidney	kidney
31	chr3:155211400-155213200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:155211600-155215800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:155211800-155213800	Enhancers	GM12878-XiMat	blood
34	chr3:155212000-155214800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:155212200-155214800	Weak transcription	Thymus	Thymus
36	chr3:155212600-155214600	Weak transcription	Fetal Thymus	thymus
37	chr3:155212600-155214800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:155212800-155216800	Weak transcription	Primary T cells from cord blood	blood
39	chr3:155212800-155230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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