Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10936004	0.89[ASN][1000 genomes]
rs11709283	0.84[ASN][1000 genomes]
rs11709568	0.84[ASN][1000 genomes]
rs11714606	0.82[ASN][1000 genomes]
rs12630784	0.83[ASN][1000 genomes]
rs12633188	0.84[ASN][1000 genomes]
rs12633236	0.83[ASN][1000 genomes]
rs13074373	0.84[ASN][1000 genomes]
rs13080233	0.84[ASN][1000 genomes]
rs13093286	0.85[ASN][1000 genomes]
rs28575712	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35259851	0.84[ASN][1000 genomes]
rs35630673	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680182	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4680183	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680185	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6440993	0.84[ASN][1000 genomes]
rs6440994	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6440995	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6798100	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7616618	0.84[ASN][1000 genomes]
rs7616703	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7618495	0.83[ASN][1000 genomes]
rs7643640	0.84[ASN][1000 genomes]
rs9809653	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9818939	0.82[ASN][1000 genomes]
rs9829532	0.84[ASN][1000 genomes]
rs9848852	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9850280	0.84[ASN][1000 genomes]
rs9856512	0.82[ASN][1000 genomes]
rs9870325	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155177600-155186800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:155178400-155198800	Weak transcription	Thymus	Thymus
3	chr3:155180800-155200200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:155181400-155186200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:155182800-155186800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:155183000-155185800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155184200-155186000	Weak transcription	Fetal Thymus	thymus
8	chr3:155184800-155193000	Weak transcription	Dnd41	blood

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