Variant report

Variant	rs16826618
Chromosome Location	chr3:156332964-156332965
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156327398..156329830-chr3:156332246..156334290,2	K562	blood:
2	chr3:156302603..156304258-chr3:156331317..156334123,2	MCF-7	breast:
3	chr3:156323850..156326333-chr3:156332556..156334276,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16826602	1.00[EUR][1000 genomes]
rs16826603	1.00[EUR][1000 genomes]
rs16826607	0.82[JPT][hapmap]
rs57217336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59343105	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6765047	1.00[EUR][1000 genomes]
rs908807	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156328200-156335400	Weak transcription	K562	blood
2	chr3:156330400-156337800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:156331800-156334200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:156332000-156333400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:156332000-156333400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:156332000-156334000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:156332000-156334000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:156332000-156334000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:156332000-156334200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:156332000-156335800	Enhancers	HSMM	muscle
11	chr3:156332000-156336000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:156332000-156336200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:156332000-156336200	Enhancers	HMEC	breast
14	chr3:156332000-156336400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:156332000-156336600	Enhancers	NHEK	skin
16	chr3:156332000-156339200	Enhancers	Osteobl	bone
17	chr3:156332200-156333000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:156332200-156333600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:156332200-156333800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:156332200-156334000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:156332200-156334000	Enhancers	NHDF-Ad	bronchial
22	chr3:156332200-156334000	Enhancers	NHLF	lung
23	chr3:156332200-156334200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:156332200-156334200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr3:156332200-156334400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:156332200-156334400	Enhancers	HSMMtube	muscle
27	chr3:156332200-156334600	Enhancers	NH-A	brain
28	chr3:156332200-156336000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:156332400-156333000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:156332400-156334000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:156332600-156334000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:156332800-156333000	Enhancers	Duodenum Mucosa	Duodenum
33	chr3:156332800-156333000	Enhancers	Lung	lung
34	chr3:156332800-156333200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr3:156332800-156333200	Weak transcription	GM12878-XiMat	blood
36	chr3:156332800-156333600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:156332800-156333600	Enhancers	Left Ventricle	heart
38	chr3:156332800-156333800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr3:156332800-156334000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:156332800-156334000	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr3:156332800-156334000	Enhancers	Brain Anterior Caudate	brain
42	chr3:156332800-156338000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links