Variant report

Variant	rs57217336
Chromosome Location	chr3:156334806-156334807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12107723	1.00[AMR][1000 genomes]
rs16826602	1.00[EUR][1000 genomes]
rs16826603	1.00[EUR][1000 genomes]
rs16826618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59343105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6765047	1.00[EUR][1000 genomes]
rs73023819	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156328200-156335400	Weak transcription	K562	blood
2	chr3:156330400-156337800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:156332000-156335800	Enhancers	HSMM	muscle
4	chr3:156332000-156336000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156332000-156336200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:156332000-156336200	Enhancers	HMEC	breast
7	chr3:156332000-156336400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:156332000-156336600	Enhancers	NHEK	skin
9	chr3:156332000-156339200	Enhancers	Osteobl	bone
10	chr3:156332200-156336000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:156332800-156338000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:156333000-156338200	Weak transcription	Lung	lung
13	chr3:156333600-156335200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:156333800-156338000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:156334000-156335000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:156334000-156335400	Weak transcription	NHDF-Ad	bronchial
17	chr3:156334000-156335600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:156334000-156336600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:156334000-156338200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:156334400-156335400	Weak transcription	HSMMtube	muscle
21	chr3:156334400-156336400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:156334400-156338400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:156334600-156335000	Weak transcription	NH-A	brain
24	chr3:156334600-156335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:156334800-156338200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:156334800-156339200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links