Variant report

Variant	rs6765047
Chromosome Location	chr3:156326254-156326255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156323850..156326333-chr3:156332556..156334276,2	MCF-7	breast:
2	chr3:156323436..156326270-chr3:156335570..156337927,2	K562	blood:
3	chr3:156164322..156166836-chr3:156325532..156327536,2	K562	blood:
4	chr3:156324594..156326430-chr3:156340933..156343753,2	K562	blood:
5	chr3:156312372..156315703-chr3:156323347..156326264,3	K562	blood:
6	chr3:156316378..156327816-chr3:156388248..156396556,24	K562	blood:

Variant related genes	Relation type
ENSG00000242370	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12632784	1.00[CEU][hapmap]
rs16826514	1.00[CEU][hapmap]
rs16826602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16826607	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[ASN][1000 genomes]
rs16826618	1.00[EUR][1000 genomes]
rs55934657	0.87[ASN][1000 genomes]
rs56865334	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57217336	1.00[EUR][1000 genomes]
rs57231972	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59343105	1.00[EUR][1000 genomes]
rs60571863	0.87[ASN][1000 genomes]
rs61363943	1.00[ASN][1000 genomes]
rs72558055	1.00[AMR][1000 genomes]
rs73875722	0.87[ASN][1000 genomes]
rs9681788	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156324200-156332000	Weak transcription	HMEC	breast
2	chr3:156324400-156326600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:156324400-156326600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156324400-156328800	Weak transcription	Psoas Muscle	Psoas
5	chr3:156324400-156332000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:156324400-156332000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:156324400-156332800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:156324800-156326400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:156324800-156326600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:156324800-156326600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:156324800-156327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:156325000-156326400	Weak transcription	HepG2	liver
13	chr3:156325000-156326600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156325000-156326800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:156325000-156327800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:156325000-156332200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:156325200-156327600	Weak transcription	GM12878-XiMat	blood
18	chr3:156325200-156327800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:156325400-156327800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:156325600-156328200	Enhancers	Fetal Intestine Small	intestine
21	chr3:156325800-156328200	Enhancers	K562	blood
22	chr3:156326000-156326600	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:156326000-156328200	Enhancers	Fetal Intestine Large	intestine
24	chr3:156326200-156326600	Enhancers	Duodenum Mucosa	Duodenum
25	chr3:156326200-156328200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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