Variant report

Variant	rs9681788
Chromosome Location	chr3:156249151-156249152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156244041..156246275-chr3:156247961..156249711,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12632784	1.00[CEU][hapmap]
rs16826514	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[EUR][1000 genomes]
rs16826602	1.00[CEU][hapmap]
rs16826603	1.00[CEU][hapmap]
rs16826607	1.00[CEU][hapmap]
rs28364817	1.00[EUR][1000 genomes]
rs55934657	1.00[EUR][1000 genomes]
rs56865334	1.00[EUR][1000 genomes]
rs60571863	1.00[EUR][1000 genomes]
rs6765047	1.00[CEU][hapmap]
rs73875722	1.00[EUR][1000 genomes]
rs7631828	1.00[EUR][1000 genomes]
rs7643608	1.00[EUR][1000 genomes]
rs875580	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877683	chr3:156180366-156272351	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156230200-156251000	Weak transcription	Left Ventricle	heart
2	chr3:156232200-156249200	Weak transcription	Gastric	stomach
3	chr3:156234400-156251200	Weak transcription	Ovary	ovary
4	chr3:156236000-156250200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:156236800-156251000	Weak transcription	Pancreas	Pancrea
6	chr3:156236800-156251200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:156237200-156250600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:156238200-156251400	Weak transcription	A549	lung
9	chr3:156240400-156260200	Weak transcription	Esophagus	oesophagus
10	chr3:156240600-156251800	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:156241600-156250800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:156241600-156255800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:156241800-156251000	Weak transcription	HSMMtube	muscle
14	chr3:156242000-156253000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:156242200-156251200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:156243000-156255200	Weak transcription	Dnd41	blood
17	chr3:156243200-156251000	Weak transcription	HSMM	muscle
18	chr3:156243200-156253800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:156243200-156255600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr3:156243200-156255600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:156243200-156255800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr3:156243200-156256600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:156243200-156256800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:156243200-156256800	Weak transcription	GM12878-XiMat	blood
25	chr3:156243200-156257000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr3:156243200-156257000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:156243200-156258800	Weak transcription	Primary B cells from peripheral blood	blood
28	chr3:156243400-156256600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:156243400-156256800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:156244000-156249800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr3:156244000-156257000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:156244200-156250400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:156244400-156253000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:156244600-156257000	Weak transcription	Lung	lung
35	chr3:156244800-156252200	Weak transcription	NHLF	lung
36	chr3:156245000-156257000	Weak transcription	Spleen	Spleen
37	chr3:156245400-156257200	Weak transcription	Fetal Brain Male	brain
38	chr3:156246000-156249400	Enhancers	Brain Hippocampus Middle	brain
39	chr3:156246000-156253200	Weak transcription	Fetal Stomach	stomach
40	chr3:156246200-156249600	Enhancers	Brain Substantia Nigra	brain
41	chr3:156246600-156252800	Weak transcription	Liver	Liver
42	chr3:156246800-156252800	Weak transcription	Fetal Intestine Small	intestine
43	chr3:156246800-156263600	Weak transcription	Fetal Brain Female	brain
44	chr3:156247000-156251200	Weak transcription	Aorta	Aorta
45	chr3:156247200-156253000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:156247200-156263800	Weak transcription	Thymus	Thymus
47	chr3:156247600-156249200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:156247600-156257200	Weak transcription	Hela-S3	cervix
49	chr3:156247800-156252800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr3:156247800-156253000	Weak transcription	Rectal Mucosa Donor 31	rectum

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