Variant report

Variant	rs28364817
Chromosome Location	chr3:156273700-156273701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SREBP1	chr3:156271429-156274240	GM12878	blood:	n/a	n/a
2	MXI1	chr3:156271033-156273803	IMR90	lung:	n/a	chr3:156273113-156273122
3	MXI1	chr3:156271443-156273802	SK-N-SH	brain:	n/a	chr3:156273113-156273122
4	SREBP2	chr3:156272530-156274332	GM12878	blood:	n/a	n/a
5	TEAD4	chr3:156272529-156273700	K562	blood:	n/a	n/a
6	ZNF384	chr3:156272729-156273740	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:156268357..156274553-chr3:156389283..156394606,15	MCF-7	breast:
2	chr3:156260735..156275674-chr3:156389736..156397850,44	K562	blood:
3	chr3:156270771..156274735-chr3:156390391..156394038,18	K562	blood:
4	chr3:156273435..156275672-chr3:156891080..156893062,2	K562	blood:
5	chr3:156269857..156276442-chr3:156389324..156394083,11	MCF-7	breast:

Variant related genes	Relation type
SSR3	TF binding region
ENSG00000222675	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243176	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16826514	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55934657	1.00[EUR][1000 genomes]
rs56865334	1.00[EUR][1000 genomes]
rs60571863	1.00[EUR][1000 genomes]
rs73875722	1.00[EUR][1000 genomes]
rs7631828	1.00[EUR][1000 genomes]
rs7643608	1.00[EUR][1000 genomes]
rs9681788	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156270800-156273800	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr3:156271000-156273800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156271200-156273800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:156271200-156273800	Active TSS	GM12878-XiMat	blood
5	chr3:156271600-156273800	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr3:156271600-156273800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:156271800-156273800	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr3:156271800-156273800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:156271800-156273800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr3:156271800-156274000	Active TSS	Fetal Lung	lung
11	chr3:156272000-156273800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:156272000-156273800	Active TSS	Brain Anterior Caudate	brain
13	chr3:156272000-156273800	Active TSS	Brain Hippocampus Middle	brain
14	chr3:156272400-156273800	Active TSS	Primary hematopoietic stem cells	blood
15	chr3:156272400-156273800	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr3:156272800-156273800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr3:156273200-156273800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:156273200-156273800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:156273200-156273800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:156273200-156273800	Flanking Active TSS	Dnd41	blood
21	chr3:156273200-156273800	Flanking Active TSS	K562	blood
22	chr3:156273200-156273800	Flanking Active TSS	NH-A	brain
23	chr3:156273400-156273800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:156273400-156273800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:156273400-156273800	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr3:156273400-156273800	Flanking Active TSS	HMEC	breast
27	chr3:156273400-156273800	Flanking Active TSS	HUVEC	blood vessel
28	chr3:156273400-156274000	Enhancers	Fetal Heart	heart
29	chr3:156273400-156274000	Flanking Active TSS	A549	lung
30	chr3:156273400-156274000	Flanking Active TSS	NHEK	skin
31	chr3:156273600-156273800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr3:156273600-156273800	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr3:156273600-156273800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr3:156273600-156273800	Enhancers	Primary B cells from cord blood	blood
35	chr3:156273600-156273800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:156273600-156273800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
37	chr3:156273600-156273800	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr3:156273600-156273800	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr3:156273600-156273800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr3:156273600-156273800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr3:156273600-156273800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:156273600-156273800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr3:156273600-156273800	Enhancers	Fetal Brain Male	brain
44	chr3:156273600-156273800	Active TSS	Rectal Smooth Muscle	rectum
45	chr3:156273600-156273800	Active TSS	Thymus	Thymus
46	chr3:156273600-156273800	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr3:156273600-156274000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr3:156273600-156274000	Enhancers	Primary T cells from cord blood	blood
49	chr3:156273600-156274000	Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr3:156273600-156274000	Enhancers	Fetal Intestine Small	intestine

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