Variant report

Variant	rs56865334
Chromosome Location	chr3:156309932-156309933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16826514	1.00[EUR][1000 genomes]
rs16826602	0.82[ASN][1000 genomes]
rs16826603	0.82[ASN][1000 genomes]
rs16826607	0.82[ASN][1000 genomes]
rs28364817	1.00[EUR][1000 genomes]
rs55934657	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57231972	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs58826209	1.00[AMR][1000 genomes]
rs60571863	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61363943	0.82[ASN][1000 genomes]
rs6765047	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6768428	1.00[AMR][1000 genomes]
rs72558055	1.00[AMR][1000 genomes]
rs73875722	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7631828	1.00[EUR][1000 genomes]
rs7643608	1.00[EUR][1000 genomes]
rs9681788	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv829764	chr3:156174824-156347774	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv877684	chr3:156294987-156344825	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156302600-156311200	Weak transcription	K562	blood
2	chr3:156305400-156311800	Weak transcription	HepG2	liver
3	chr3:156305600-156311000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:156305600-156311200	Weak transcription	Liver	Liver
5	chr3:156305600-156311400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:156305800-156310600	Weak transcription	Fetal Intestine Large	intestine
7	chr3:156305800-156310600	Weak transcription	Fetal Intestine Small	intestine
8	chr3:156305800-156311200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:156305800-156311200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:156305800-156311200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:156305800-156312000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr3:156307200-156312000	Weak transcription	Left Ventricle	heart
13	chr3:156307200-156312800	Weak transcription	Pancreas	Pancrea
14	chr3:156307400-156311200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:156307400-156311200	Weak transcription	Fetal Heart	heart
16	chr3:156307400-156311400	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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