Variant report

Variant	rs6768428
Chromosome Location	chr3:156113957-156113958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2030574	1.00[AMR][1000 genomes]
rs56264609	1.00[AMR][1000 genomes]
rs56865334	1.00[AMR][1000 genomes]
rs57671537	1.00[AMR][1000 genomes]
rs58826209	1.00[AMR][1000 genomes]
rs59449974	1.00[AMR][1000 genomes]
rs6768861	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72558055	1.00[AMR][1000 genomes]
rs735572	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73873343	1.00[AMR][1000 genomes]
rs7611257	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1806015	chr3:156095513-156114898	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156108000-156114000	Weak transcription	NHDF-Ad	bronchial
2	chr3:156108200-156117000	Weak transcription	HSMMtube	muscle
3	chr3:156111200-156161600	Weak transcription	Aorta	Aorta
4	chr3:156113400-156115600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:156113600-156115400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:156113600-156115400	Enhancers	Colon Smooth Muscle	Colon
7	chr3:156113600-156115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:156113800-156114000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:156113800-156114600	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links