Variant report

Variant	rs2030574
Chromosome Location	chr3:156086338-156086339
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56264609	1.00[AMR][1000 genomes]
rs57671537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58826209	1.00[AMR][1000 genomes]
rs59449974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6768428	1.00[AMR][1000 genomes]
rs6768861	1.00[AMR][1000 genomes]
rs6791462	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs72558055	1.00[AMR][1000 genomes]
rs735572	1.00[AMR][1000 genomes]
rs73873343	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611257	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv1793356	chr3:156079516-156093505	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1803569	chr3:156081835-156093273	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1813303	chr3:156081835-156093505	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1814153	chr3:156081835-156093505	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156076400-156091600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156082800-156086400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:156082800-156086600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:156083400-156086600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:156083400-156086600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:156083800-156090200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:156084600-156090200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:156085200-156086800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:156085400-156086400	Enhancers	Fetal Stomach	stomach
10	chr3:156085400-156086800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr3:156085600-156087600	Weak transcription	Fetal Brain Male	brain
12	chr3:156086000-156086600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr3:156086000-156086600	Bivalent Enhancer	GM12878-XiMat	blood
14	chr3:156086200-156086400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:156086200-156090000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:156086200-156090000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:156086200-156090200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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