Variant report

Variant	rs59449974
Chromosome Location	chr3:156094393-156094394
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2030574	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56264609	1.00[AMR][1000 genomes]
rs57671537	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58826209	1.00[AMR][1000 genomes]
rs6768428	1.00[AMR][1000 genomes]
rs6768861	1.00[AMR][1000 genomes]
rs72558055	1.00[AMR][1000 genomes]
rs735572	1.00[AMR][1000 genomes]
rs73873343	1.00[AMR][1000 genomes]
rs7611257	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv3461206	chr3:156090258-156095656	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3505414	chr3:156091008-156094806	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3461203	chr3:156091283-156094631	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3505421	chr3:156091433-156094681	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2620873	chr3:156091782-156094476	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1809974	chr3:156092164-156095513	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1812747	chr3:156092164-156096606	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1809143	chr3:156092164-156098920	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv592115	chr3:156092548-156097836	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156088600-156096000	Weak transcription	Placenta	Placenta
2	chr3:156090800-156100600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:156091800-156095000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:156092400-156101600	Weak transcription	Aorta	Aorta
5	chr3:156094200-156105000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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