Variant report

Variant	rs16827766
Chromosome Location	chr3:157232510-157232511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11923416	1.00[AMR][1000 genomes]
rs11924914	1.00[AMR][1000 genomes]
rs11928409	1.00[AMR][1000 genomes]
rs11928417	1.00[AMR][1000 genomes]
rs16827563	1.00[AMR][1000 genomes]
rs16827677	1.00[AMR][1000 genomes]
rs16827681	1.00[AMR][1000 genomes]
rs16827685	1.00[AMR][1000 genomes]
rs16827690	1.00[AMR][1000 genomes]
rs55695446	1.00[AMR][1000 genomes]
rs56108012	1.00[AMR][1000 genomes]
rs56247352	1.00[AMR][1000 genomes]
rs56682605	1.00[AMR][1000 genomes]
rs57705005	1.00[AMR][1000 genomes]
rs59369651	1.00[AMR][1000 genomes]
rs60821393	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60922199	1.00[AMR][1000 genomes]
rs6776505	1.00[AMR][1000 genomes]
rs6788044	1.00[AMR][1000 genomes]
rs6791405	1.00[AMR][1000 genomes]
rs6791497	1.00[AMR][1000 genomes]
rs6793548	1.00[AMR][1000 genomes]
rs6794570	1.00[AMR][1000 genomes]
rs6799588	1.00[AMR][1000 genomes]
rs6801619	1.00[AMR][1000 genomes]
rs6804490	1.00[AMR][1000 genomes]
rs73876303	1.00[AMR][1000 genomes]
rs73876318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876327	1.00[AMR][1000 genomes]
rs73876330	1.00[AMR][1000 genomes]
rs9680932	1.00[AMR][1000 genomes]
rs9682235	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157217800-157235400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:157221800-157244800	Weak transcription	NH-A	brain
3	chr3:157222600-157241800	Weak transcription	HSMM	muscle
4	chr3:157223200-157239000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:157227400-157241600	Weak transcription	Osteobl	bone
6	chr3:157232200-157233400	Strong transcription	HUVEC	blood vessel
7	chr3:157232400-157232600	Bivalent Enhancer	A549	lung
8	chr3:157232400-157232800	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links