Variant report

Variant	rs60821393
Chromosome Location	chr3:157248318-157248319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157244287..157247060-chr3:157247713..157249691,2	MCF-7	breast:
2	chr3:157244064..157246692-chr3:157247762..157250308,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11923416	1.00[AMR][1000 genomes]
rs11924914	1.00[AMR][1000 genomes]
rs11928409	1.00[AMR][1000 genomes]
rs11928417	1.00[AMR][1000 genomes]
rs16827563	1.00[AMR][1000 genomes]
rs16827677	1.00[AMR][1000 genomes]
rs16827681	1.00[AMR][1000 genomes]
rs16827685	1.00[AMR][1000 genomes]
rs16827690	1.00[AMR][1000 genomes]
rs16827766	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55695446	1.00[AMR][1000 genomes]
rs56108012	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56247352	1.00[AMR][1000 genomes]
rs56682605	1.00[AMR][1000 genomes]
rs57705005	1.00[AMR][1000 genomes]
rs59369651	1.00[AMR][1000 genomes]
rs60922199	1.00[AMR][1000 genomes]
rs6776505	1.00[AMR][1000 genomes]
rs6788044	1.00[AMR][1000 genomes]
rs6791405	1.00[AMR][1000 genomes]
rs6791497	1.00[AMR][1000 genomes]
rs6793548	1.00[AMR][1000 genomes]
rs6794570	1.00[AMR][1000 genomes]
rs6799588	1.00[AMR][1000 genomes]
rs6801619	1.00[AMR][1000 genomes]
rs6804490	1.00[AMR][1000 genomes]
rs73876303	1.00[AMR][1000 genomes]
rs73876318	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876327	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876330	1.00[AMR][1000 genomes]
rs9680932	1.00[AMR][1000 genomes]
rs9682235	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157244800-157248600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:157245400-157248800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:157246000-157248400	Weak transcription	HSMMtube	muscle
4	chr3:157246000-157250000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157246600-157248800	Weak transcription	HSMM	muscle
6	chr3:157246600-157249800	Weak transcription	Fetal Heart	heart
7	chr3:157246600-157251200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:157246600-157252600	Weak transcription	Ovary	ovary
9	chr3:157246800-157250400	Flanking Active TSS	HUVEC	blood vessel
10	chr3:157247200-157251000	Enhancers	K562	blood
11	chr3:157247600-157248400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157247600-157250000	Enhancers	NHDF-Ad	bronchial
13	chr3:157247600-157251600	Flanking Active TSS	Osteobl	bone
14	chr3:157247800-157248600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:157248000-157248800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:157248000-157252000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:157248200-157250000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:157248200-157250200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:157248200-157250400	Flanking Active TSS	NH-A	brain
20	chr3:157248200-157251000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:157248200-157251000	Enhancers	NHLF	lung
22	chr3:157248200-157251400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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