Variant report

Variant	rs6794570
Chromosome Location	chr3:157177998-157177999
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157175083..157179044-chr3:157180593..157185169,5	K562	blood:
2	chr3:157176898..157178471-chr3:157180465..157182221,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11915662	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11923416	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924914	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11928409	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11928417	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827563	1.00[AMR][1000 genomes]
rs16827677	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827681	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827685	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827690	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16827766	1.00[AMR][1000 genomes]
rs55695446	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56108012	1.00[AMR][1000 genomes]
rs56247352	1.00[AMR][1000 genomes]
rs56682605	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57705005	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59369651	1.00[AMR][1000 genomes]
rs60821393	1.00[AMR][1000 genomes]
rs60922199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6776505	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788044	1.00[AMR][1000 genomes]
rs6791405	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791497	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6799588	1.00[AMR][1000 genomes]
rs6801619	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804490	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876303	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73876318	1.00[AMR][1000 genomes]
rs73876319	1.00[AMR][1000 genomes]
rs73876327	1.00[AMR][1000 genomes]
rs73876330	1.00[AMR][1000 genomes]
rs9680932	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682235	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:157164600-157185400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:157170200-157187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:157175400-157181200	Weak transcription	Lung	lung
6	chr3:157175800-157178200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:157176800-157178800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:157177200-157178400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:157177200-157178400	Genic enhancers	HUVEC	blood vessel
10	chr3:157177400-157178600	Flanking Active TSS	NHLF	lung
11	chr3:157177400-157179600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157177600-157178000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:157177600-157178000	Flanking Active TSS	HSMM	muscle
14	chr3:157177600-157178000	Flanking Active TSS	HSMMtube	muscle
15	chr3:157177600-157178000	Flanking Active TSS	NHDF-Ad	bronchial
16	chr3:157177600-157178200	Enhancers	Adipose Nuclei	Adipose
17	chr3:157177600-157178600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr3:157177600-157178800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:157177600-157178800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:157177600-157179000	Genic enhancers	Osteobl	bone
21	chr3:157177800-157178000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:157177800-157178000	Flanking Active TSS	NH-A	brain
23	chr3:157177800-157178800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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