Variant report

Variant	rs16827970
Chromosome Location	chr2:151070719-151070720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151070416..151072908-chr2:151081382..151084515,3	MCF-7	breast:
2	chr2:151021749..151023909-chr2:151069571..151071445,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16827949	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4299356	0.91[EUR][1000 genomes]
rs4519547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59661912	0.91[EUR][1000 genomes]
rs62167368	0.91[EUR][1000 genomes]
rs6747712	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151063800-151071400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:151065600-151070800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:151066000-151071000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:151066000-151071000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:151066000-151071200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:151066000-151071200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:151066200-151071000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:151066400-151072800	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:151067600-151071400	Weak transcription	NHLF	lung
10	chr2:151068800-151071200	Enhancers	Fetal Intestine Large	intestine
11	chr2:151069000-151073400	Enhancers	Stomach Mucosa	stomach
12	chr2:151069400-151071800	Weak transcription	Small Intestine	intestine
13	chr2:151069600-151070800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:151069600-151071000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:151069600-151071000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr2:151069600-151071000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr2:151069600-151071200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:151069600-151071200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr2:151069600-151071400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:151069800-151071000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr2:151070000-151071200	Weak transcription	Fetal Kidney	kidney
22	chr2:151070000-151071200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr2:151070200-151071000	Enhancers	A549	lung
24	chr2:151070200-151071000	Enhancers	Dnd41	blood
25	chr2:151070600-151071400	Weak transcription	Fetal Intestine Small	intestine
26	chr2:151070600-151072000	Enhancers	Fetal Lung	lung

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