Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165225	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11895581	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1372435	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16827949	0.91[EUR][1000 genomes]
rs16827970	0.91[EUR][1000 genomes]
rs16828056	1.00[ASN][1000 genomes]
rs4299356	1.00[EUR][1000 genomes]
rs4366927	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4425094	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4425095	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4519547	0.91[EUR][1000 genomes]
rs4577299	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4664428	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62167368	1.00[EUR][1000 genomes]
rs6740399	1.00[ASN][1000 genomes]
rs6747712	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761697	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs734135	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7563730	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7564743	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151113000-151138400	Weak transcription	Liver	Liver
2	chr2:151119400-151128600	Weak transcription	Aorta	Aorta
3	chr2:151121000-151128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:151124600-151128600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:151124800-151128000	Weak transcription	HMEC	breast
6	chr2:151124800-151128400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:151125200-151127800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:151125200-151128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:151125200-151128200	Weak transcription	NHEK	skin
10	chr2:151125200-151128600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:151126400-151126600	Enhancers	Rectal Smooth Muscle	rectum

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