Variant report

Variant	rs6740399
Chromosome Location	chr2:151165149-151165150
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10165225	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165666	0.83[EUR][1000 genomes]
rs10173947	0.83[EUR][1000 genomes]
rs10209398	0.83[EUR][1000 genomes]
rs1036793	1.00[EUR][1000 genomes]
rs11693655	0.83[EUR][1000 genomes]
rs11888189	0.83[EUR][1000 genomes]
rs11895581	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899312	0.83[EUR][1000 genomes]
rs12692649	0.83[EUR][1000 genomes]
rs13394286	0.83[EUR][1000 genomes]
rs1372431	1.00[EUR][1000 genomes]
rs1372432	1.00[EUR][1000 genomes]
rs1372433	1.00[EUR][1000 genomes]
rs1372435	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372436	1.00[EUR][1000 genomes]
rs1441969	1.00[EUR][1000 genomes]
rs16828056	1.00[ASN][1000 genomes]
rs16828061	1.00[EUR][1000 genomes]
rs16828069	1.00[EUR][1000 genomes]
rs1899375	1.00[EUR][1000 genomes]
rs2334315	1.00[EUR][1000 genomes]
rs35956280	1.00[EUR][1000 genomes]
rs3924622	1.00[EUR][1000 genomes]
rs4233802	0.83[EUR][1000 genomes]
rs4362583	0.83[EUR][1000 genomes]
rs4366927	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402789	0.83[EUR][1000 genomes]
rs4404295	0.83[EUR][1000 genomes]
rs4414701	1.00[EUR][1000 genomes]
rs4425094	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425095	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508619	0.83[EUR][1000 genomes]
rs4522630	1.00[EUR][1000 genomes]
rs4544461	1.00[EUR][1000 genomes]
rs4563247	0.83[EUR][1000 genomes]
rs4566385	1.00[EUR][1000 genomes]
rs4577299	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585053	0.83[EUR][1000 genomes]
rs4589785	0.83[EUR][1000 genomes]
rs4600678	1.00[EUR][1000 genomes]
rs4603783	1.00[EUR][1000 genomes]
rs4606957	0.83[EUR][1000 genomes]
rs4664428	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59661912	1.00[ASN][1000 genomes]
rs62167367	0.83[EUR][1000 genomes]
rs62167369	0.83[EUR][1000 genomes]
rs6727491	1.00[EUR][1000 genomes]
rs6731304	1.00[EUR][1000 genomes]
rs6747712	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6748737	0.83[EUR][1000 genomes]
rs6761282	1.00[EUR][1000 genomes]
rs6761697	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734135	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560459	0.80[EUR][1000 genomes]
rs7563730	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564257	0.83[EUR][1000 genomes]
rs7564743	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608904	1.00[EUR][1000 genomes]
rs9287819	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151161400-151170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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