Variant report

Variant	rs4425094
Chromosome Location	chr2:151139891-151139892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10165225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165666	1.00[EUR][1000 genomes]
rs10173947	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10209398	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1036793	0.83[EUR][1000 genomes]
rs11693655	1.00[EUR][1000 genomes]
rs11888189	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11895581	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899312	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12623971	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12692649	1.00[EUR][1000 genomes]
rs13394286	1.00[EUR][1000 genomes]
rs1372431	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1372432	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1372433	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1372435	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372436	0.83[EUR][1000 genomes]
rs1441969	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16828056	1.00[ASN][1000 genomes]
rs16828061	0.83[EUR][1000 genomes]
rs16828069	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1899375	0.83[EUR][1000 genomes]
rs2334315	0.83[EUR][1000 genomes]
rs35956280	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3924622	0.83[EUR][1000 genomes]
rs4233802	1.00[EUR][1000 genomes]
rs4362583	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366927	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4402789	1.00[EUR][1000 genomes]
rs4404295	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4414701	0.83[EUR][1000 genomes]
rs4425095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491744	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4508619	1.00[EUR][1000 genomes]
rs4522630	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4544461	0.83[EUR][1000 genomes]
rs4563247	1.00[EUR][1000 genomes]
rs4566385	0.83[EUR][1000 genomes]
rs4577299	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4585053	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4589785	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4600678	0.83[EUR][1000 genomes]
rs4603783	0.83[EUR][1000 genomes]
rs4606957	1.00[EUR][1000 genomes]
rs4664428	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59661912	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62167367	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62167369	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6727491	0.83[EUR][1000 genomes]
rs6731304	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6740399	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747712	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6748737	1.00[EUR][1000 genomes]
rs6761282	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6761697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734135	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7560459	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7563730	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564257	1.00[EUR][1000 genomes]
rs7564743	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608140	0.92[EUR][1000 genomes]
rs7608904	0.83[EUR][1000 genomes]
rs9287819	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9287820	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151135600-151140000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:151135800-151140200	Enhancers	Adipose Nuclei	Adipose
3	chr2:151135800-151140800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:151136000-151140000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:151136000-151140000	Enhancers	NHDF-Ad	bronchial
6	chr2:151137400-151143000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr2:151137400-151143000	Weak transcription	Osteobl	bone
8	chr2:151137800-151140000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:151137800-151141000	Enhancers	Fetal Muscle Leg	muscle
10	chr2:151138400-151140000	Enhancers	HSMMtube	muscle
11	chr2:151138400-151140600	Enhancers	Liver	Liver
12	chr2:151138800-151140000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:151138800-151143200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:151139000-151140000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:151139000-151143200	Weak transcription	HMEC	breast
16	chr2:151139200-151140800	Weak transcription	Psoas Muscle	Psoas
17	chr2:151139400-151140200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:151139800-151140200	Weak transcription	Fetal Lung	lung
19	chr2:151139800-151143200	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links