Variant report

Variant	rs9287820
Chromosome Location	chr2:151153897-151153898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10165225	0.94[EUR][1000 genomes]
rs10165666	0.94[EUR][1000 genomes]
rs10173947	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10209398	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11693655	0.94[EUR][1000 genomes]
rs11888189	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11895581	0.94[EUR][1000 genomes]
rs11899312	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12623971	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12692649	0.94[EUR][1000 genomes]
rs13394286	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1372431	0.96[AMR][1000 genomes]
rs1372432	0.96[AMR][1000 genomes]
rs1372433	0.96[AMR][1000 genomes]
rs1441969	0.96[AMR][1000 genomes]
rs1441970	0.90[AMR][1000 genomes]
rs16828061	0.84[AMR][1000 genomes]
rs16828069	0.97[AMR][1000 genomes]
rs1978941	0.90[AMR][1000 genomes]
rs35956280	0.96[AMR][1000 genomes]
rs36025659	0.86[AMR][1000 genomes]
rs3924622	0.88[AMR][1000 genomes]
rs4233802	0.94[EUR][1000 genomes]
rs4299356	0.90[AMR][1000 genomes]
rs4362583	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4366927	0.92[EUR][1000 genomes]
rs4402789	0.94[EUR][1000 genomes]
rs4404295	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4414701	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425094	0.94[EUR][1000 genomes]
rs4425095	0.94[EUR][1000 genomes]
rs4491744	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4508619	0.94[EUR][1000 genomes]
rs4522630	0.96[AMR][1000 genomes]
rs4544461	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4563247	0.94[EUR][1000 genomes]
rs4566385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4577299	0.94[EUR][1000 genomes]
rs4585053	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4589784	0.90[AMR][1000 genomes]
rs4589785	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4600678	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4603783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4606957	0.94[EUR][1000 genomes]
rs62167367	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62167368	0.90[AMR][1000 genomes]
rs62167369	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6731304	0.96[AMR][1000 genomes]
rs6748737	0.94[EUR][1000 genomes]
rs6761282	0.96[AMR][1000 genomes]
rs6761697	0.94[EUR][1000 genomes]
rs7560459	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7563730	0.94[EUR][1000 genomes]
rs7564257	0.94[EUR][1000 genomes]
rs7564743	0.94[EUR][1000 genomes]
rs7608140	0.87[EUR][1000 genomes]
rs7608904	0.93[AMR][1000 genomes]
rs9287819	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151152000-151154000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:151152000-151154000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:151152200-151154000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:151152200-151154000	Enhancers	Brain Germinal Matrix	brain
5	chr2:151152200-151154200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:151152600-151154000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:151152600-151154800	Enhancers	HUVEC	blood vessel
8	chr2:151152800-151154000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:151153000-151154000	Enhancers	NHDF-Ad	bronchial
10	chr2:151153200-151154000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:151153200-151154000	Enhancers	Adipose Nuclei	Adipose
12	chr2:151153200-151154000	Enhancers	Brain Anterior Caudate	brain
13	chr2:151153200-151154000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr2:151153200-151154000	Enhancers	Fetal Lung	lung
15	chr2:151153200-151154000	Enhancers	A549	lung
16	chr2:151153400-151154000	Enhancers	Brain Hippocampus Middle	brain
17	chr2:151153400-151154000	Enhancers	Brain Substantia Nigra	brain
18	chr2:151153400-151154000	Enhancers	Fetal Brain Female	brain
19	chr2:151153400-151155600	Enhancers	Fetal Brain Male	brain
20	chr2:151153800-151159600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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