Variant report

Variant	rs1978941
Chromosome Location	chr2:151157777-151157778
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10173947	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10209398	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11888189	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11899312	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12623971	0.84[AMR][1000 genomes]
rs13394286	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1372431	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1372432	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1372433	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1441969	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1441970	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16828061	0.81[AMR][1000 genomes]
rs16828069	0.86[AMR][1000 genomes]
rs35956280	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs36025659	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4299356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4362583	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4404295	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4414701	0.90[AMR][1000 genomes]
rs4491744	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4522630	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4544461	0.90[AMR][1000 genomes]
rs4566385	0.90[AMR][1000 genomes]
rs4585053	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4589784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4589785	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4600678	0.90[AMR][1000 genomes]
rs4603783	0.90[AMR][1000 genomes]
rs62167367	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs62167368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62167369	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6731304	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6747712	0.81[AMR][1000 genomes]
rs6761282	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7560459	0.90[AMR][1000 genomes]
rs7608904	0.90[AMR][1000 genomes]
rs9287819	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9287820	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151153800-151159600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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