Variant report

Variant	rs36025659
Chromosome Location	chr2:151167954-151167955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151166169..151168597-chr2:151180178..151182476,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10173947	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10209398	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11888189	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11899312	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12623971	0.80[AMR][1000 genomes]
rs13394286	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1372431	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1372432	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1372433	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1441969	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1441970	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16828069	0.83[AMR][1000 genomes]
rs1978941	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35956280	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4299356	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4362583	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4404295	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4414701	0.86[AMR][1000 genomes]
rs4491744	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4522630	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4544461	0.86[AMR][1000 genomes]
rs4566385	0.86[AMR][1000 genomes]
rs4585053	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4589784	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4589785	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4600678	0.86[AMR][1000 genomes]
rs4603783	0.86[AMR][1000 genomes]
rs62167367	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62167368	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs62167369	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6731304	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6761282	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7560459	0.86[AMR][1000 genomes]
rs7608904	0.86[AMR][1000 genomes]
rs9287819	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9287820	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151161400-151170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:151165400-151168200	Enhancers	Stomach Mucosa	stomach
3	chr2:151165800-151168400	Enhancers	Fetal Intestine Large	intestine
4	chr2:151165800-151168600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:151166800-151168400	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr2:151167000-151168200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:151167800-151168000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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