Variant report

Variant	rs7560459
Chromosome Location	chr2:151119046-151119047
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151117604..151119597-chr7:54412422..54414582,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10165225	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10165666	0.97[EUR][1000 genomes]
rs10173947	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10209398	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1036793	0.80[EUR][1000 genomes]
rs11693655	0.97[EUR][1000 genomes]
rs11888189	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11895581	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11899312	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12623971	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12692649	0.97[EUR][1000 genomes]
rs13394286	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1372431	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1372432	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1372433	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1372435	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1372436	0.80[EUR][1000 genomes]
rs1441969	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1441970	0.90[AMR][1000 genomes]
rs16828061	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16828069	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1899375	0.80[EUR][1000 genomes]
rs1978941	0.90[AMR][1000 genomes]
rs2334315	0.80[EUR][1000 genomes]
rs35956280	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs36025659	0.86[AMR][1000 genomes]
rs3924622	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4233802	0.97[EUR][1000 genomes]
rs4299356	0.90[AMR][1000 genomes]
rs4362583	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4366927	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4402789	0.97[EUR][1000 genomes]
rs4404295	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4414701	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4425094	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4425095	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4491744	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4508619	0.97[EUR][1000 genomes]
rs4522630	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4544461	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4563247	0.97[EUR][1000 genomes]
rs4566385	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4577299	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4585053	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4589784	0.90[AMR][1000 genomes]
rs4589785	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4600678	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4603783	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4606957	0.97[EUR][1000 genomes]
rs4664428	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62167367	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62167368	0.90[AMR][1000 genomes]
rs62167369	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6727491	0.80[EUR][1000 genomes]
rs6731304	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6740399	0.80[EUR][1000 genomes]
rs6748737	0.97[EUR][1000 genomes]
rs6761282	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6761697	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs734135	0.80[EUR][1000 genomes]
rs7563730	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7564257	0.97[EUR][1000 genomes]
rs7564743	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7608140	0.89[EUR][1000 genomes]
rs7608904	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9287819	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9287820	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151113000-151138400	Weak transcription	Liver	Liver
2	chr2:151116800-151120600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:151116800-151124400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:151117600-151124000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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