Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10165225	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11895581	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1372435	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16827949	0.91[EUR][1000 genomes]
rs16827970	0.91[EUR][1000 genomes]
rs16828056	1.00[ASN][1000 genomes]
rs1978941	0.81[AMR][1000 genomes]
rs4299356	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366927	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4425094	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4425095	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4519547	0.91[EUR][1000 genomes]
rs4577299	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4589784	0.81[AMR][1000 genomes]
rs4664428	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59661912	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62167368	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6740399	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6761697	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs734135	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7563730	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7564743	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151113000-151138400	Weak transcription	Liver	Liver
2	chr2:151128000-151138400	Weak transcription	Psoas Muscle	Psoas
3	chr2:151129600-151136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:151130800-151133000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:151131200-151132800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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