Variant report

Variant	rs16830638
Chromosome Location	chr3:179334511-179334512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:179334428-179334614	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179297625..179299441-chr3:179334166..179336663,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239096	TF binding region
NDUFB5	TF binding region
ENSG00000136518	Chromatin interaction

rs_ID	r²[population]
rs10937006	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12494578	1.00[MEX][hapmap]
rs13317851	1.00[AMR][1000 genomes]
rs13320255	0.91[AFR][1000 genomes]
rs13327320	0.91[AFR][1000 genomes]
rs28379850	0.88[AFR][1000 genomes]
rs28613162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28681305	1.00[AMR][1000 genomes]
rs59314389	1.00[EUR][1000 genomes]
rs9290681	0.88[AFR][1000 genomes]
rs9821240	1.00[AMR][1000 genomes]
rs9842384	0.81[AFR][1000 genomes]
rs9878137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882074	1.00[AMR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179323200-179334800	Weak transcription	Ovary	ovary
2	chr3:179323400-179334800	Weak transcription	Fetal Kidney	kidney
3	chr3:179323400-179335600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:179323400-179335600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:179323400-179335800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:179323400-179336200	Weak transcription	Fetal Lung	lung
7	chr3:179323400-179338400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:179323400-179338400	Weak transcription	A549	lung
9	chr3:179323400-179338400	Weak transcription	HSMMtube	muscle
10	chr3:179323400-179338600	Weak transcription	Fetal Brain Female	brain
11	chr3:179323400-179338800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:179323400-179341400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:179323400-179342400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:179323400-179344400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:179323400-179362200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr3:179323600-179335200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:179323600-179335400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:179323600-179336000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:179323600-179336400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:179323600-179339800	Weak transcription	Stomach Mucosa	stomach
21	chr3:179323800-179336200	Weak transcription	Thymus	Thymus
22	chr3:179323800-179338800	Weak transcription	Lung	lung
23	chr3:179323800-179339400	Weak transcription	Brain Angular Gyrus	brain
24	chr3:179323800-179339800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:179323800-179339800	Weak transcription	Colonic Mucosa	Colon
26	chr3:179323800-179351200	Weak transcription	Fetal Brain Male	brain
27	chr3:179324000-179334800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:179324000-179335400	Weak transcription	HMEC	breast
29	chr3:179324000-179335800	Weak transcription	Brain Substantia Nigra	brain
30	chr3:179324000-179338800	Weak transcription	Aorta	Aorta
31	chr3:179324000-179339000	Weak transcription	Pancreas	Pancrea
32	chr3:179324000-179344400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:179324000-179345600	Weak transcription	NHEK	skin
34	chr3:179324000-179352200	Weak transcription	Esophagus	oesophagus
35	chr3:179324200-179334600	Weak transcription	Adipose Nuclei	Adipose
36	chr3:179324200-179334600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr3:179324200-179344200	Weak transcription	HepG2	liver
38	chr3:179324400-179334800	Weak transcription	Gastric	stomach
39	chr3:179324400-179335800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:179325200-179338400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr3:179325400-179334800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:179325400-179335800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:179325600-179334600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:179325600-179334800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:179325800-179334600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:179326000-179335000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr3:179327000-179335800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr3:179327200-179334800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr3:179327200-179336200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr3:179327200-179338400	Weak transcription	Brain Hippocampus Middle	brain

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