Variant report

Variant	rs28613162
Chromosome Location	chr3:179325467-179325468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:179323802-179325939	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:179320984..179325882-chr3:179330514..179334145,5	K562	blood:
2	chr3:179315047..179317226-chr3:179323450..179326068,2	K562	blood:
3	chr3:179319378..179320998-chr3:179324065..179327027,2	MCF-7	breast:
4	chr3:179320416..179324525-chr3:179324863..179328984,6	K562	blood:
5	chr3:179322008..179326605-chr3:179329033..179334344,8	MCF-7	breast:

No data

Variant related genes	Relation type
MRPL47	TF binding region
ENSG00000136521	Chromatin interaction
ENSG00000239096	Chromatin interaction
ENSG00000136522	Chromatin interaction

rs_ID	r²[population]
rs10937006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13317851	1.00[AMR][1000 genomes]
rs13320255	0.91[AFR][1000 genomes]
rs13327320	0.91[AFR][1000 genomes]
rs16830638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28379850	0.88[AFR][1000 genomes]
rs28681305	1.00[AMR][1000 genomes]
rs59314389	1.00[EUR][1000 genomes]
rs9290681	0.88[AFR][1000 genomes]
rs9821240	1.00[AMR][1000 genomes]
rs9842384	0.81[AFR][1000 genomes]
rs9878137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882074	1.00[AMR][1000 genomes]

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179323200-179326600	Weak transcription	Small Intestine	intestine
2	chr3:179323200-179326800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:179323200-179326800	Weak transcription	Spleen	Spleen
4	chr3:179323200-179334800	Weak transcription	Ovary	ovary
5	chr3:179323400-179326400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:179323400-179326400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:179323400-179326600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr3:179323400-179326800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:179323400-179327000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:179323400-179328600	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:179323400-179330800	Weak transcription	NH-A	brain
12	chr3:179323400-179330800	Weak transcription	NHDF-Ad	bronchial
13	chr3:179323400-179331600	Weak transcription	HSMM	muscle
14	chr3:179323400-179334800	Weak transcription	Fetal Kidney	kidney
15	chr3:179323400-179335600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr3:179323400-179335600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:179323400-179335800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:179323400-179336200	Weak transcription	Fetal Lung	lung
19	chr3:179323400-179338400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:179323400-179338400	Weak transcription	A549	lung
21	chr3:179323400-179338400	Weak transcription	HSMMtube	muscle
22	chr3:179323400-179338600	Weak transcription	Fetal Brain Female	brain
23	chr3:179323400-179338800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:179323400-179341400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:179323400-179342400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:179323400-179344400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:179323400-179362200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr3:179323600-179326200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:179323600-179326400	Weak transcription	Primary T cells from cord blood	blood
30	chr3:179323600-179327600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:179323600-179330600	Weak transcription	HUVEC	blood vessel
32	chr3:179323600-179331200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:179323600-179331800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:179323600-179334000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:179323600-179335200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:179323600-179335400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr3:179323600-179336000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:179323600-179336400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:179323600-179339800	Weak transcription	Stomach Mucosa	stomach
40	chr3:179323800-179326600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:179323800-179326800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:179323800-179327000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr3:179323800-179329800	Weak transcription	Right Atrium	heart
44	chr3:179323800-179334400	Weak transcription	Brain Germinal Matrix	brain
45	chr3:179323800-179336200	Weak transcription	Thymus	Thymus
46	chr3:179323800-179338800	Weak transcription	Lung	lung
47	chr3:179323800-179339400	Weak transcription	Brain Angular Gyrus	brain
48	chr3:179323800-179339800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:179323800-179339800	Weak transcription	Colonic Mucosa	Colon
50	chr3:179323800-179351200	Weak transcription	Fetal Brain Male	brain

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