Variant report

Variant	rs13327320
Chromosome Location	chr3:179284625-179284626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:179280041..179285511-chr3:179286133..179291816,8	MCF-7	breast:
2	chr3:179279521..179282759-chr3:179284135..179288432,8	MCF-7	breast:
3	chr3:179280150..179285253-chr3:179320041..179322744,5	K562	blood:
4	chr3:179282604..179285382-chr3:179332499..179334422,2	K562	blood:
5	chr3:179284432..179286920-chr3:179291890..179294515,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000239096	Chromatin interaction
ENSG00000136522	Chromatin interaction
ENSG00000136521	Chromatin interaction
ENSG00000136518	Chromatin interaction

rs_ID	r²[population]
rs10937006	0.97[AFR][1000 genomes]
rs13320255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16830638	0.91[AFR][1000 genomes]
rs17838872	1.00[AMR][1000 genomes]
rs28379850	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28613162	0.91[AFR][1000 genomes]
rs9290681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9842384	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179281800-179288800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:179281800-179292600	Weak transcription	Spleen	Spleen
3	chr3:179281800-179297400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:179281800-179315000	Weak transcription	Esophagus	oesophagus
5	chr3:179282000-179284800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:179282000-179286800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:179282000-179287400	Weak transcription	Placenta	Placenta
8	chr3:179282000-179287400	Weak transcription	Left Ventricle	heart
9	chr3:179282000-179287400	Weak transcription	Ovary	ovary
10	chr3:179282000-179287600	Weak transcription	Fetal Brain Female	brain
11	chr3:179282000-179287600	Weak transcription	Lung	lung
12	chr3:179282000-179287800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:179282000-179287800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:179282000-179287800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:179282000-179287800	Weak transcription	Brain Substantia Nigra	brain
16	chr3:179282000-179287800	Weak transcription	Gastric	stomach
17	chr3:179282000-179287800	Weak transcription	HSMM	muscle
18	chr3:179282000-179288000	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:179282000-179288000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr3:179282000-179288200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:179282000-179288200	Weak transcription	Fetal Brain Male	brain
22	chr3:179282000-179288200	Weak transcription	Small Intestine	intestine
23	chr3:179282000-179288400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:179282000-179289400	Weak transcription	Right Ventricle	heart
25	chr3:179282000-179290200	Weak transcription	Psoas Muscle	Psoas
26	chr3:179282000-179292600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:179282000-179292800	Weak transcription	HSMMtube	muscle
28	chr3:179282000-179300600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:179282000-179304400	Weak transcription	Colonic Mucosa	Colon
30	chr3:179282000-179316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:179282000-179321200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:179282000-179321800	Weak transcription	Aorta	Aorta
33	chr3:179282200-179286800	Weak transcription	Primary B cells from cord blood	blood
34	chr3:179282200-179287400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:179282200-179287400	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr3:179282200-179287400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:179282200-179287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr3:179282200-179287600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:179282200-179287600	Weak transcription	Adipose Nuclei	Adipose
40	chr3:179282200-179287600	Weak transcription	NH-A	brain
41	chr3:179282200-179287600	Weak transcription	Osteobl	bone
42	chr3:179282200-179287800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:179282200-179287800	Weak transcription	Liver	Liver
44	chr3:179282200-179287800	Weak transcription	Brain Anterior Caudate	brain
45	chr3:179282200-179287800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:179282200-179287800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr3:179282200-179288000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr3:179282200-179288400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr3:179282200-179288400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr3:179282200-179292200	Weak transcription	Brain Angular Gyrus	brain

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