The 2.0 version of rSNPBase

Variant report

Variant rs17838872
Chromosome Location chr3:179294995-179294996
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179281800-179297400 Weak transcription Placenta Amnion Placenta Amnion
2 chr3:179281800-179315000 Weak transcription Esophagus oesophagus
3 chr3:179282000-179300600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr3:179282000-179304400 Weak transcription Colonic Mucosa Colon
5 chr3:179282000-179316000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
6 chr3:179282000-179321200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr3:179282000-179321800 Weak transcription Aorta Aorta
8 chr3:179282200-179304600 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr3:179282400-179306200 Weak transcription A549 lung
10 chr3:179282400-179311000 Weak transcription Stomach Mucosa stomach
11 chr3:179282600-179296400 Weak transcription Brain Cingulate Gyrus brain
12 chr3:179282800-179295800 Weak transcription Fetal Intestine Small intestine
13 chr3:179284600-179304600 Weak transcription Pancreas Pancrea
14 chr3:179286400-179304600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr3:179286400-179319800 Strong transcription Primary monocytes fromperipheralblood blood
16 chr3:179286600-179316200 Strong transcription Dnd41 blood
17 chr3:179286600-179319600 Strong transcription Monocytes-CD14+_RO01746 blood
18 chr3:179286600-179320800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr3:179286800-179320400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr3:179287000-179320800 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr3:179287400-179296000 Strong transcription Placenta Placenta
22 chr3:179287400-179296800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
23 chr3:179287400-179302200 Strong transcription Duodenum Mucosa Duodenum
24 chr3:179287400-179320000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr3:179287400-179320200 Strong transcription iPS-20b Cell Line embryonic stem cell
26 chr3:179287400-179320200 Strong transcription Primary hematopoietic stem cells short term culture blood
27 chr3:179287400-179320200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr3:179287400-179320200 Strong transcription Fetal Thymus thymus
29 chr3:179287400-179320400 Strong transcription Primary T cells fromperipheralblood blood
30 chr3:179287400-179320600 Strong transcription HUES48 Cell Line embryonic stem cell
31 chr3:179287400-179320600 Strong transcription HUES6 Cell Line embryonic stem cell
32 chr3:179287600-179302200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr3:179287600-179320000 Strong transcription Primary T helper cells fromperipheralblood blood
34 chr3:179287600-179320000 Strong transcription Primary T regulatory cells fromperipheralblood blood
35 chr3:179287600-179320200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
36 chr3:179287800-179295400 Strong transcription HSMM muscle
37 chr3:179287800-179295600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr3:179287800-179296000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr3:179287800-179320000 Strong transcription Primary T helper cells PMA-I stimulated --
40 chr3:179287800-179320800 Strong transcription iPS-18 Cell Line embryonic stem cell
41 chr3:179288000-179296000 Strong transcription Duodenum Smooth Muscle Duodenum
42 chr3:179289600-179297600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
43 chr3:179289600-179312400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr3:179289800-179295400 Weak transcription Lung lung
45 chr3:179289800-179298800 Weak transcription Fetal Brain Male brain
46 chr3:179289800-179304600 Weak transcription Right Ventricle heart
47 chr3:179289800-179305200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr3:179289800-179310600 Weak transcription Small Intestine intestine
49 chr3:179290800-179319200 Strong transcription Fetal Intestine Large intestine
50 chr3:179291200-179295600 Strong transcription Hela-S3 cervix

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Last update: Aug 31, 2015