Variant report

Variant	rs9846236
Chromosome Location	chr3:179321620-179321621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:179321560-179323592	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr3:179321484-179323397	MCF10A-Er-Src	breast:	n/a	n/a
3	CHD1	chr3:179321572-179323097	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:179302655..179304843-chr3:179320971..179322874,2	K562	blood:
2	chr3:179288610..179291096-chr3:179319656..179322184,2	K562	blood:
3	chr3:179280150..179285253-chr3:179320041..179322744,5	K562	blood:
4	chr3:179320984..179325882-chr3:179330514..179334145,5	K562	blood:
5	chr3:179279625..179281650-chr3:179320996..179324134,3	K562	blood:
6	chr3:179280504..179283827-chr3:179320994..179324955,7	MCF-7	breast:
7	chr3:179321015..179323323-chr3:179329660..179332733,3	MCF-7	breast:
8	chr3:179320199..179322213-chr3:179349598..179351488,2	MCF-7	breast:
9	chr3:179282024..179283942-chr3:179319918..179322411,3	MCF-7	breast:

No data

Variant related genes	Relation type
NDUFB5	TF binding region
ENSG00000136518	Chromatin interaction
ENSG00000239096	Chromatin interaction
ENSG00000136521	Chromatin interaction

rs_ID	r²[population]
rs17838872	0.87[AFR][1000 genomes]
rs9837875	0.86[AFR][1000 genomes]
rs9878137	1.00[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179282000-179321800	Weak transcription	Aorta	Aorta
2	chr3:179314600-179321800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:179315400-179322000	Weak transcription	Small Intestine	intestine
4	chr3:179316800-179321800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:179319000-179321800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:179319200-179321800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:179319400-179321800	Weak transcription	Brain Anterior Caudate	brain
8	chr3:179319400-179321800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:179320200-179321800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr3:179320200-179321800	Weak transcription	Ovary	ovary
11	chr3:179320800-179321800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:179320800-179321800	Flanking Active TSS	Dnd41	blood
13	chr3:179320800-179323400	Active TSS	H1 Cell Line	embryonic stem cell
14	chr3:179320800-179323800	Active TSS	K562	blood
15	chr3:179321000-179321800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr3:179321000-179321800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr3:179321000-179321800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:179321000-179321800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:179321000-179321800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr3:179321000-179322000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:179321000-179323200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:179321000-179323400	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr3:179321000-179323400	Active TSS	Fetal Brain Female	brain
24	chr3:179321000-179323400	Active TSS	HSMMtube	muscle
25	chr3:179321000-179323600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:179321000-179323600	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr3:179321000-179323600	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr3:179321200-179321800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:179321200-179321800	Enhancers	Brain Angular Gyrus	brain
30	chr3:179321200-179321800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:179321200-179322000	Active TSS	HepG2	liver
32	chr3:179321200-179322200	Active TSS	Right Atrium	heart
33	chr3:179321200-179323400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:179321200-179323400	Active TSS	NHLF	lung
35	chr3:179321200-179323600	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr3:179321200-179323600	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr3:179321200-179323600	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr3:179321200-179323600	Active TSS	Right Ventricle	heart
39	chr3:179321200-179323600	Active TSS	GM12878-XiMat	blood
40	chr3:179321200-179323800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:179321400-179321800	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr3:179321400-179321800	Weak transcription	Fetal Intestine Small	intestine
43	chr3:179321400-179321800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr3:179321400-179321800	Flanking Active TSS	Osteobl	bone
45	chr3:179321400-179322000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:179321400-179322000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr3:179321400-179322000	Flanking Active TSS	Primary T cells from cord blood	blood
48	chr3:179321400-179322000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr3:179321400-179322000	Weak transcription	Esophagus	oesophagus
50	chr3:179321400-179322000	Weak transcription	Gastric	stomach

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