Variant report

Variant	rs9837875
Chromosome Location	chr3:179304440-179304441
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:179302451-179309594	K562	blood:	n/a	n/a
2	POLR2A	chr3:179304408-179304917	GM12892	blood:	n/a	n/a
3	POLR2A	chr3:179304418-179305344	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:179304432-179304897	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr3:179304437-179304824	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr3:179304316-179304922	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr3:179303815-179307629	K562	blood:	n/a	n/a
8	POLR2A	chr3:179303422-179305861	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr3:179304412-179304911	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:179286372..179290194-chr3:179301871..179305288,4	K562	blood:
2	chr3:179279849..179284082-chr3:179301368..179304702,4	MCF-7	breast:
3	chr3:179302655..179304843-chr3:179320971..179322874,2	K562	blood:

Variant related genes	Relation type
ENSG00000272910	TF binding region
ENSG00000272660	TF binding region
ENSG00000136521	Chromatin interaction
ENSG00000136522	Chromatin interaction
ENSG00000136518	Chromatin interaction

rs_ID	r²[population]
rs17838872	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9846236	0.86[AFR][1000 genomes]
rs9878137	0.86[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179281800-179315000	Weak transcription	Esophagus	oesophagus
2	chr3:179282000-179316000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:179282000-179321200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:179282000-179321800	Weak transcription	Aorta	Aorta
5	chr3:179282200-179304600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:179282400-179306200	Weak transcription	A549	lung
7	chr3:179282400-179311000	Weak transcription	Stomach Mucosa	stomach
8	chr3:179284600-179304600	Weak transcription	Pancreas	Pancrea
9	chr3:179286400-179304600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:179286400-179319800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr3:179286600-179316200	Strong transcription	Dnd41	blood
12	chr3:179286600-179319600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:179286600-179320800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:179286800-179320400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:179287000-179320800	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:179287400-179320000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:179287400-179320200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:179287400-179320200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:179287400-179320200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:179287400-179320200	Strong transcription	Fetal Thymus	thymus
21	chr3:179287400-179320400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr3:179287400-179320600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:179287400-179320600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:179287600-179320000	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:179287600-179320000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:179287600-179320200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:179287800-179320000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr3:179287800-179320800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:179289600-179312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:179289800-179304600	Weak transcription	Right Ventricle	heart
31	chr3:179289800-179305200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:179289800-179310600	Weak transcription	Small Intestine	intestine
33	chr3:179290800-179319200	Strong transcription	Fetal Intestine Large	intestine
34	chr3:179292000-179320200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr3:179292000-179320800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr3:179292000-179320800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr3:179292200-179308600	Strong transcription	Adipose Nuclei	Adipose
38	chr3:179292200-179309600	Strong transcription	Fetal Muscle Trunk	muscle
39	chr3:179292200-179312000	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr3:179292200-179320000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr3:179292400-179304800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr3:179292400-179307000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:179292800-179305800	Strong transcription	Ovary	ovary
44	chr3:179292800-179307400	Strong transcription	Brain Germinal Matrix	brain
45	chr3:179293400-179316000	Weak transcription	Spleen	Spleen
46	chr3:179293600-179321000	Weak transcription	Gastric	stomach
47	chr3:179293800-179306200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr3:179294200-179321200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr3:179294800-179307000	Weak transcription	Fetal Heart	heart
50	chr3:179294800-179307200	Weak transcription	Psoas Muscle	Psoas

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