Variant report

Variant	rs16831824
Chromosome Location	chr2:190506925-190506926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1225075	0.89[YRI][hapmap]
rs1225079	0.89[YRI][hapmap]
rs1225080	0.89[YRI][hapmap]
rs1225081	0.89[YRI][hapmap]
rs1225085	0.89[YRI][hapmap]
rs1225088	0.89[YRI][hapmap]
rs1225089	0.89[YRI][hapmap]
rs1225090	0.89[YRI][hapmap]
rs1225096	0.89[YRI][hapmap]
rs1225099	0.88[YRI][hapmap]
rs1225104	0.89[YRI][hapmap]
rs1225107	0.88[YRI][hapmap]
rs1225109	0.88[YRI][hapmap]
rs1225110	0.89[YRI][hapmap]
rs1225120	0.89[YRI][hapmap]
rs1233264	0.89[YRI][hapmap]
rs16831859	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs16831861	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs16831866	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs16831876	0.88[YRI][hapmap]
rs16831884	0.88[YRI][hapmap]
rs16831894	0.89[YRI][hapmap]
rs1866643	0.88[YRI][hapmap]
rs1899024	1.00[YRI][hapmap]
rs1899027	0.88[YRI][hapmap]
rs2164831	0.89[YRI][hapmap]
rs2244190	0.88[YRI][hapmap]
rs2249907	0.89[YRI][hapmap]
rs2252487	0.89[YRI][hapmap]
rs2254044	0.89[YRI][hapmap]
rs2254144	0.89[YRI][hapmap]
rs2254167	0.88[YRI][hapmap]
rs2255705	0.88[YRI][hapmap]
rs2256718	0.87[YRI][hapmap]
rs2256719	0.89[YRI][hapmap]
rs2262765	0.89[YRI][hapmap]
rs6434364	0.89[YRI][hapmap]
rs6434369	0.88[YRI][hapmap]
rs6725344	0.88[YRI][hapmap]
rs7606224	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16831824	ORMDL1	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190503400-190507000	Enhancers	Stomach Mucosa	stomach
2	chr2:190506800-190522400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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