Variant report

Variant	rs16831964
Chromosome Location	chr2:190620360-190620361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190619706..190621333-chr2:190623417..190625217,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1233264	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12622938	0.85[EUR][1000 genomes]
rs16831841	0.85[EUR][1000 genomes]
rs16831880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16831887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16831909	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16832035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17199060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3791772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4666785	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667307	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5742959	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5742960	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5743002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5743006	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5743010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5743022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16831964	ORMDL1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190550800-190626800	Weak transcription	Right Ventricle	heart
2	chr2:190576800-190627000	Weak transcription	Pancreas	Pancrea
3	chr2:190577000-190622600	Weak transcription	Aorta	Aorta
4	chr2:190583000-190626800	Weak transcription	Psoas Muscle	Psoas
5	chr2:190589400-190626600	Weak transcription	HUVEC	blood vessel
6	chr2:190594800-190627000	Weak transcription	Gastric	stomach
7	chr2:190597800-190626600	Weak transcription	Fetal Heart	heart
8	chr2:190599000-190626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:190601400-190626800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:190602400-190626400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:190603800-190626800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:190605000-190626800	Weak transcription	Fetal Brain Male	brain
13	chr2:190607000-190626800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:190607000-190626800	Weak transcription	NH-A	brain
15	chr2:190607400-190626800	Weak transcription	HSMMtube	muscle
16	chr2:190607800-190621000	Strong transcription	Liver	Liver
17	chr2:190607800-190622400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:190608600-190626200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr2:190609600-190626600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:190609600-190627000	Weak transcription	Small Intestine	intestine
21	chr2:190609800-190620400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:190609800-190626200	Weak transcription	HMEC	breast
23	chr2:190610000-190626800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:190610200-190627000	Weak transcription	Lung	lung
25	chr2:190610200-190627000	Weak transcription	Spleen	Spleen
26	chr2:190610400-190626200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr2:190610400-190626800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr2:190610400-190626800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr2:190610400-190627000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:190611200-190625800	Weak transcription	NHEK	skin
31	chr2:190611400-190626600	Weak transcription	NHLF	lung
32	chr2:190611800-190626000	Weak transcription	HepG2	liver
33	chr2:190613200-190622600	Weak transcription	Fetal Stomach	stomach
34	chr2:190613200-190626200	Weak transcription	A549	lung
35	chr2:190613200-190626800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr2:190613200-190626800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:190613200-190626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:190613200-190626800	Weak transcription	Brain Substantia Nigra	brain
39	chr2:190613200-190626800	Weak transcription	Colonic Mucosa	Colon
40	chr2:190613200-190627000	Weak transcription	Left Ventricle	heart
41	chr2:190613400-190621600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:190613400-190622400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:190613600-190626600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:190613600-190626800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:190613600-190626800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr2:190613800-190621000	Weak transcription	Fetal Intestine Large	intestine
47	chr2:190613800-190626000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:190614800-190626800	Weak transcription	Brain Germinal Matrix	brain
49	chr2:190615000-190626400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr2:190615000-190626800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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